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Mining databases for protein aggregation: a review.
Tsiolaki PL, Nastou KC, Hamodrakas SJ, Iconomidou VA. Tsiolaki PL, et al. Among authors: hamodrakas sj. Amyloid. 2017 Sep;24(3):143-152. doi: 10.1080/13506129.2017.1353966. Epub 2017 Jul 18. Amyloid. 2017. PMID: 28719238 Review.
A Web-based classification system of DNA-binding protein families.
Karmirantzou M, Hamodrakas SJ. Karmirantzou M, et al. Protein Eng. 2001 Jul;14(7):465-72. doi: 10.1093/protein/14.7.465. Protein Eng. 2001. PMID: 11522919
A novel method for GPCR recognition and family classification from sequence alone using signatures derived from profile hidden Markov models.
Papasaikas PK, Bagos PG, Litou ZI, Hamodrakas SJ. Papasaikas PK, et al. SAR QSAR Environ Res. 2003 Oct-Dec;14(5-6):413-20. doi: 10.1080/10629360310001623999. SAR QSAR Environ Res. 2003. PMID: 14758984
Consensus prediction of amyloidogenic determinants in amyloid fibril-forming proteins.
Hamodrakas SJ, Liappa C, Iconomidou VA. Hamodrakas SJ, et al. Int J Biol Macromol. 2007 Aug 1;41(3):295-300. doi: 10.1016/j.ijbiomac.2007.03.008. Epub 2007 Mar 25. Int J Biol Macromol. 2007. PMID: 17477968
Natural protective amyloids.
Iconomidou VA, Hamodrakas SJ. Iconomidou VA, et al. Curr Protein Pept Sci. 2008 Jun;9(3):291-309. doi: 10.2174/138920308784534041. Curr Protein Pept Sci. 2008. PMID: 18537684 Review.
Amyloidogenic determinants are usually not buried.
Frousios KK, Iconomidou VA, Karletidi CM, Hamodrakas SJ. Frousios KK, et al. BMC Struct Biol. 2009 Jul 9;9:44. doi: 10.1186/1472-6807-9-44. BMC Struct Biol. 2009. PMID: 19589171 Free PMC article.
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