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Navigating the future of bacterial molecular epidemiology.
Baker S, Hanage WP, Holt KE. Baker S, et al. Among authors: hanage wp. Curr Opin Microbiol. 2010 Oct;13(5):640-5. doi: 10.1016/j.mib.2010.08.002. Epub 2010 Sep 16. Curr Opin Microbiol. 2010. PMID: 20846899 Free PMC article. Review.
Fine-Scale Haplotype Structure Reveals Strong Signatures of Positive Selection in a Recombining Bacterial Pathogen.
Arnold B, Sohail M, Wadsworth C, Corander J, Hanage WP, Sunyaev S, Grad YH. Arnold B, et al. Among authors: hanage wp. Mol Biol Evol. 2020 Feb 1;37(2):417-428. doi: 10.1093/molbev/msz225. Mol Biol Evol. 2020. PMID: 31589312
The relative contributions of recombination and point mutation to the diversification of bacterial clones.
Spratt BG, Hanage WP, Feil EJ. Spratt BG, et al. Among authors: hanage wp. Curr Opin Microbiol. 2001 Oct;4(5):602-6. doi: 10.1016/s1369-5274(00)00257-5. Curr Opin Microbiol. 2001. PMID: 11587939 Review.
Rapid pneumococcal evolution in response to clinical interventions.
Croucher NJ, Harris SR, Fraser C, Quail MA, Burton J, van der Linden M, McGee L, von Gottberg A, Song JH, Ko KS, Pichon B, Baker S, Parry CM, Lambertsen LM, Shahinas D, Pillai DR, Mitchell TJ, Dougan G, Tomasz A, Klugman KP, Parkhill J, Hanage WP, Bentley SD. Croucher NJ, et al. Among authors: hanage wp. Science. 2011 Jan 28;331(6016):430-4. doi: 10.1126/science.1198545. Science. 2011. PMID: 21273480 Free PMC article.
High levels of recombination among Streptococcus pneumoniae isolates from the Gambia.
Donkor ES, Bishop CJ, Gould K, Hinds J, Antonio M, Wren B, Hanage WP. Donkor ES, et al. Among authors: hanage wp. mBio. 2011 Jun 21;2(3):e00040-11. doi: 10.1128/mBio.00040-11. Print 2011. mBio. 2011. PMID: 21693638 Free PMC article.
Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011.
Grad YH, Lipsitch M, Feldgarden M, Arachchi HM, Cerqueira GC, Fitzgerald M, Godfrey P, Haas BJ, Murphy CI, Russ C, Sykes S, Walker BJ, Wortman JR, Young S, Zeng Q, Abouelleil A, Bochicchio J, Chauvin S, Desmet T, Gujja S, McCowan C, Montmayeur A, Steelman S, Frimodt-Møller J, Petersen AM, Struve C, Krogfelt KA, Bingen E, Weill FX, Lander ES, Nusbaum C, Birren BW, Hung DT, Hanage WP. Grad YH, et al. Among authors: hanage wp. Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):3065-70. doi: 10.1073/pnas.1121491109. Epub 2012 Feb 6. Proc Natl Acad Sci U S A. 2012. PMID: 22315421 Free PMC article.
Population subdivision and the detection of recombination in non-typable Haemophilus influenzae.
Connor TR, Corander J, Hanage WP. Connor TR, et al. Among authors: hanage wp. Microbiology (Reading). 2012 Dec;158(Pt 12):2958-2964. doi: 10.1099/mic.0.063073-0. Epub 2012 Oct 4. Microbiology (Reading). 2012. PMID: 23038806 Free PMC article.
Bacterial genomes in epidemiology--present and future.
Croucher NJ, Harris SR, Grad YH, Hanage WP. Croucher NJ, et al. Among authors: hanage wp. Philos Trans R Soc Lond B Biol Sci. 2013 Feb 4;368(1614):20120202. doi: 10.1098/rstb.2012.0202. Print 2013 Mar 19. Philos Trans R Soc Lond B Biol Sci. 2013. PMID: 23382424 Free PMC article. Review.
Comprehensive identification of single nucleotide polymorphisms associated with beta-lactam resistance within pneumococcal mosaic genes.
Chewapreecha C, Marttinen P, Croucher NJ, Salter SJ, Harris SR, Mather AE, Hanage WP, Goldblatt D, Nosten FH, Turner C, Turner P, Bentley SD, Parkhill J. Chewapreecha C, et al. Among authors: hanage wp. PLoS Genet. 2014 Aug 7;10(8):e1004547. doi: 10.1371/journal.pgen.1004547. eCollection 2014 Aug. PLoS Genet. 2014. PMID: 25101644 Free PMC article.
Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus.
Chang HH, Dordel J, Donker T, Worby CJ, Feil EJ, Hanage WP, Bentley SD, Huang SS, Lipsitch M. Chang HH, et al. Among authors: hanage wp. Genome Med. 2016 Feb 13;8(1):18. doi: 10.1186/s13073-016-0274-3. Genome Med. 2016. PMID: 26873713 Free PMC article.
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