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Phylogenetic interpretation during outbreaks requires caution.
Villabona-Arenas CJ, Hanage WP, Tully DC. Villabona-Arenas CJ, et al. Among authors: hanage wp. Nat Microbiol. 2020 Jul;5(7):876-877. doi: 10.1038/s41564-020-0738-5. Nat Microbiol. 2020. PMID: 32427978 Free PMC article.
Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing.
Břinda K, Callendrello A, Ma KC, MacFadden DR, Charalampous T, Lee RS, Cowley L, Wadsworth CB, Grad YH, Kucherov G, O'Grady J, Baym M, Hanage WP. Břinda K, et al. Among authors: hanage wp. Nat Microbiol. 2020 Mar;5(3):455-464. doi: 10.1038/s41564-019-0656-6. Epub 2020 Feb 10. Nat Microbiol. 2020. PMID: 32042129 Free PMC article.
Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae.
Azarian T, Martinez PP, Arnold BJ, Qiu X, Grant LR, Corander J, Fraser C, Croucher NJ, Hammitt LL, Reid R, Santosham M, Weatherholtz RC, Bentley SD, O'Brien KL, Lipsitch M, Hanage WP. Azarian T, et al. Among authors: hanage wp. PLoS Biol. 2020 Oct 22;18(10):e3000878. doi: 10.1371/journal.pbio.3000878. eCollection 2020 Oct. PLoS Biol. 2020. PMID: 33091022 Free PMC article.
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