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Persistence and Evolution of SARS-CoV-2 in an Immunocompromised Host.
Choi B, Choudhary MC, Regan J, Sparks JA, Padera RF, Qiu X, Solomon IH, Kuo HH, Boucau J, Bowman K, Adhikari UD, Winkler ML, Mueller AA, Hsu TY, Desjardins M, Baden LR, Chan BT, Walker BD, Lichterfeld M, Brigl M, Kwon DS, Kanjilal S, Richardson ET, Jonsson AH, Alter G, Barczak AK, Hanage WP, Yu XG, Gaiha GD, Seaman MS, Cernadas M, Li JZ. Choi B, et al. Among authors: hanage wp. N Engl J Med. 2020 Dec 3;383(23):2291-2293. doi: 10.1056/NEJMc2031364. Epub 2020 Nov 11. N Engl J Med. 2020. PMID: 33176080 Free PMC article. No abstract available.
SARS-CoV-2 titers in wastewater foreshadow dynamics and clinical presentation of new COVID-19 cases.
Wu F, Xiao A, Zhang J, Moniz K, Endo N, Armas F, Bonneau R, Brown MA, Bushman M, Chai PR, Duvallet C, Erickson TB, Foppe K, Ghaeli N, Gu X, Hanage WP, Huang KH, Lee WL, Matus M, McElroy KA, Nagler J, Rhode SF, Santillana M, Tucker JA, Wuertz S, Zhao S, Thompson J, Alm EJ. Wu F, et al. Among authors: hanage wp. medRxiv. 2020 Jul 6:2020.06.15.20117747. doi: 10.1101/2020.06.15.20117747. Preprint. medRxiv. 2020. PMID: 32607521 Free PMC article. Updated.
Phylogenetic analysis of SARS-CoV-2 in the Boston area highlights the role of recurrent importation and superspreading events.
Lemieux JE, Siddle KJ, Shaw BM, Loreth C, Schaffner SF, Gladden-Young A, Adams G, Fink T, Tomkins-Tinch CH, Krasilnikova LA, DeRuff KC, Rudy M, Bauer MR, Lagerborg KA, Normandin E, Chapman SB, Reilly SK, Anahtar MN, Lin AE, Carter A, Myhrvold C, Kemball ME, Chaluvadi S, Cusick C, Flowers K, Neumann A, Cerrato F, Farhat M, Slater D, Harris JB, Branda J, Hooper D, Gaeta JM, Baggett TP, O'Connell J, Gnirke A, Lieberman TD, Philippakis A, Burns M, Brown CM, Luban J, Ryan ET, Turbett SE, LaRocque RC, Hanage WP, Gallagher GR, Madoff LC, Smole S, Pierce VM, Rosenberg E, Sabeti PC, Park DJ, Maclnnis BL. Lemieux JE, et al. Among authors: hanage wp. medRxiv. 2020 Aug 25:2020.08.23.20178236. doi: 10.1101/2020.08.23.20178236. Preprint. medRxiv. 2020. PMID: 32869040 Free PMC article. Updated.
Characteristics of Clinically Asymptomatic Patients with SARS-CoV-2 Infections, Case Series.
Goldenfeld M, Nir-Paz R, Segal G, Bar-On E, Mendelson E, Mandelboim M, Wolf DG, Marom EM, Israely T, Achdout H, Rahav G, Hanage WP, Regev-Yochay G. Goldenfeld M, et al. Among authors: hanage wp. Prehosp Disaster Med. 2021 Feb;36(1):125-128. doi: 10.1017/S1049023X20001466. Epub 2020 Nov 17. Prehosp Disaster Med. 2021. PMID: 33198831 Free PMC article.
SARS-CoV-2 RNA concentrations in wastewater foreshadow dynamics and clinical presentation of new COVID-19 cases.
Wu F, Xiao A, Zhang J, Moniz K, Endo N, Armas F, Bonneau R, Brown MA, Bushman M, Chai PR, Duvallet C, Erickson TB, Foppe K, Ghaeli N, Gu X, Hanage WP, Huang KH, Lee WL, Matus M, McElroy KA, Nagler J, Rhode SF, Santillana M, Tucker JA, Wuertz S, Zhao S, Thompson J, Alm EJ. Wu F, et al. Among authors: hanage wp. Sci Total Environ. 2021 Sep 4;805:150121. doi: 10.1016/j.scitotenv.2021.150121. Online ahead of print. Sci Total Environ. 2021. PMID: 34534872 Free PMC article.
Variant abundance estimation for SARS-CoV-2 in wastewater using RNA-Seq quantification.
Baaijens JA, Zulli A, Ott IM, Petrone ME, Alpert T, Fauver JR, Kalinich CC, Vogels CBF, Breban MI, Duvallet C, McElroy K, Ghaeli N, Imakaev M, Mckenzie-Bennett M, Robison K, Plocik A, Schilling R, Pierson M, Littlefield R, Spencer M, Simen BB; Yale SARS-CoV-2 Genomic Surveillance Initiative, Hanage WP, Grubaugh ND, Peccia J, Baym M. Baaijens JA, et al. Among authors: hanage wp. medRxiv. 2021 Sep 2:2021.08.31.21262938. doi: 10.1101/2021.08.31.21262938. Preprint. medRxiv. 2021. PMID: 34494031 Free PMC article.
SARS-CoV-2 epidemic after social and economic reopening in three US states reveals shifts in age structure and clinical characteristics.
Wikle NB, Tran TN, Gentilesco B, Leighow SM, Albert E, Strong ER, Brinda K, Inam H, Yang F, Hossain S, Chan P, Hanage WP, Messick M, Pritchard JR, Hanks E, Boni MF. Wikle NB, et al. Among authors: hanage wp. medRxiv. 2021 Aug 18:2020.11.17.20232918. doi: 10.1101/2020.11.17.20232918. Preprint. medRxiv. 2021. PMID: 34426816 Free PMC article.
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