Hansen, Kasper D[Author] or Hansen, Kasper Daniel[Author] or 17681996[Pmid] or 21177974[Pmid] or 23999529[Pmid] or 25285208[Pmid] - Search Results

Year	Number of Results
2004	3
2007	1
2008	2
2009	1
2010	5
2011	3
2012	5
2013	3
2014	8
2015	10
2016	7
2017	7
2018	2
2019	8
2020	4
2021	5
2022	5

1

Metabolic effects of air pollution exposure and reversibility.

Rajagopalan S, Park B, Palanivel R, Vinayachandran V, Deiuliis JA, Gangwar RS, Das L, Yin J, Choi Y, Al-Kindi S, Jain MK, Hansen KD, Biswal S. Rajagopalan S, et al. Among authors: hansen kd. J Clin Invest. 2020 Nov 2;130(11):6034-6040. doi: 10.1172/JCI137315. J Clin Invest. 2020. PMID: 32780721 Free PMC article.

2

Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing.

Lee I, Razaghi R, Gilpatrick T, Molnar M, Gershman A, Sadowski N, Sedlazeck FJ, Hansen KD, Simpson JT, Timp W. Lee I, et al. Among authors: hansen kd. Nat Methods. 2020 Dec;17(12):1191-1199. doi: 10.1038/s41592-020-01000-7. Epub 2020 Nov 23. Nat Methods. 2020. PMID: 33230324 Free PMC article.

3

Coverage recommendations for methylation analysis by whole-genome bisulfite sequencing.

Ziller MJ, Hansen KD, Meissner A, Aryee MJ. Ziller MJ, et al. Among authors: hansen kd. Nat Methods. 2015 Mar;12(3):230-2, 1 p following 232. doi: 10.1038/nmeth.3152. Epub 2014 Nov 2. Nat Methods. 2015. PMID: 25362363 Free PMC article.

4

recount3: summaries and queries for large-scale RNA-seq expression and splicing.

Wilks C, Zheng SC, Chen FY, Charles R, Solomon B, Ling JP, Imada EL, Zhang D, Joseph L, Leek JT, Jaffe AE, Nellore A, Collado-Torres L, Hansen KD, Langmead B. Wilks C, et al. Among authors: hansen kd. Genome Biol. 2021 Nov 29;22(1):323. doi: 10.1186/s13059-021-02533-6. Genome Biol. 2021. PMID: 34844637 Free PMC article.

5

Orchestrating high-throughput genomic analysis with Bioconductor.

Huber W, Carey VJ, Gentleman R, Anders S, Carlson M, Carvalho BS, Bravo HC, Davis S, Gatto L, Girke T, Gottardo R, Hahne F, Hansen KD, Irizarry RA, Lawrence M, Love MI, MacDonald J, Obenchain V, Oleś AK, Pagès H, Reyes A, Shannon P, Smyth GK, Tenenbaum D, Waldron L, Morgan M. Huber W, et al. Among authors: hansen kd. Nat Methods. 2015 Feb;12(2):115-21. doi: 10.1038/nmeth.3252. Nat Methods. 2015. PMID: 25633503 Free PMC article. Review.

6

Reproducible RNA-seq analysis using recount2.

Collado-Torres L, Nellore A, Kammers K, Ellis SE, Taub MA, Hansen KD, Jaffe AE, Langmead B, Leek JT. Collado-Torres L, et al. Among authors: hansen kd. Nat Biotechnol. 2017 Apr 11;35(4):319-321. doi: 10.1038/nbt.3838. Nat Biotechnol. 2017. PMID: 28398307 Free PMC article. No abstract available.

7

Human methylome variation across Infinium 450K data on the Gene Expression Omnibus.

Maden SK, Thompson RF, Hansen KD, Nellore A. Maden SK, et al. Among authors: hansen kd. NAR Genom Bioinform. 2021 Apr 22;3(2):lqab025. doi: 10.1093/nargab/lqab025. eCollection 2021 Jun. NAR Genom Bioinform. 2021. PMID: 33937763 Free PMC article.

8

Promoter CpG Density Predicts Downstream Gene Loss-of-Function Intolerance.

Boukas L, Bjornsson HT, Hansen KD. Boukas L, et al. Among authors: hansen kd. Am J Hum Genet. 2020 Sep 3;107(3):487-498. doi: 10.1016/j.ajhg.2020.07.014. Epub 2020 Aug 14. Am J Hum Genet. 2020. PMID: 32800095 Free PMC article.

9

Leveraging the Mendelian disorders of the epigenetic machinery to systematically map functional epigenetic variation.

Luperchio TR, Boukas L, Zhang L, Pilarowski G, Jiang J, Kalinousky A, Hansen KD, Bjornsson HT. Luperchio TR, et al. Among authors: hansen kd. Elife. 2021 Aug 31;10:e65884. doi: 10.7554/eLife.65884. Elife. 2021. PMID: 34463256 Free PMC article.

10

Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traits.

Rizzardi LF, Hickey PF, Idrizi A, Tryggvadóttir R, Callahan CM, Stephens KE, Taverna SD, Zhang H, Ramazanoglu S; GTEx Consortium, Hansen KD, Feinberg AP. Rizzardi LF, et al. Among authors: hansen kd. Genome Biol. 2021 Apr 22;22(1):116. doi: 10.1186/s13059-021-02335-w. Genome Biol. 2021. PMID: 33888138 Free PMC article.

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