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Rooted phylogeny of the three superkingdoms.
Harish A, Tunlid A, Kurland CG. Harish A, et al. Biochimie. 2013 Aug;95(8):1593-604. doi: 10.1016/j.biochi.2013.04.016. Epub 2013 May 11. Biochimie. 2013. PMID: 23669449
The phylogenomics of protein structures: The backstory.
Kurland CG, Harish A. Kurland CG, et al. Among authors: harish a. Biochimie. 2015 Dec;119:284-302. doi: 10.1016/j.biochi.2015.07.027. Epub 2015 Jul 31. Biochimie. 2015. PMID: 26234735 Review.
Structural biology and genome evolution: An introduction.
Kurland CG, Harish A. Kurland CG, et al. Among authors: harish a. Biochimie. 2015 Dec;119:205-8. doi: 10.1016/j.biochi.2015.10.023. Epub 2015 Nov 4. Biochimie. 2015. PMID: 26546841 No abstract available.
Did Viruses Evolve As a Distinct Supergroup from Common Ancestors of Cells?
Harish A, Abroi A, Gough J, Kurland C. Harish A, et al. Genome Biol Evol. 2016 Aug 27;8(8):2474-81. doi: 10.1093/gbe/evw175. Genome Biol Evol. 2016. PMID: 27497315 Free PMC article.
Akaryotes and Eukaryotes are independent descendants of a universal common ancestor.
Harish A, Kurland CG. Harish A, et al. Biochimie. 2017 Jul;138:168-183. doi: 10.1016/j.biochi.2017.04.013. Epub 2017 Apr 28. Biochimie. 2017. PMID: 28461155
We reconstructed a global tree of life (ToL) with non-reversible and non-stationary models of genome evolution that root trees intrinsically. We implemented Bayesian model selection tests and compared the statistical support for four conflicting ToL hypotheses. We show tha …
We reconstructed a global tree of life (ToL) with non-reversible and non-stationary models of genome evolution that root trees intrin …
Empirical genome evolution models root the tree of life.
Harish A, Kurland CG. Harish A, et al. Biochimie. 2017 Jul;138:137-155. doi: 10.1016/j.biochi.2017.04.014. Epub 2017 May 4. Biochimie. 2017. PMID: 28478110
A reliable phylogenetic reconstruction of the evolutionary history of contemporary species depends on a robust identification of the universal common ancestor (UCA) at the root of the Tree of Life (ToL). ...The most common rooting method, the outgroup method is clea
A reliable phylogenetic reconstruction of the evolutionary history of contemporary species depends on a robust identification
Mitochondria are not captive bacteria.
Harish A, Kurland CG. Harish A, et al. J Theor Biol. 2017 Dec 7;434:88-98. doi: 10.1016/j.jtbi.2017.07.011. Epub 2017 Jul 25. J Theor Biol. 2017. PMID: 28754286
Reply to Caetano-Anollés et al. comment on "Empirical genome evolution models root the tree of life".
Harish A, Kurland C. Harish A, et al. Biochimie. 2018 Jun;149:137-138. doi: 10.1016/j.biochi.2018.04.002. Epub 2018 Apr 6. Biochimie. 2018. PMID: 29631014
We recently analyzed the robustness of competing evolution models developed to identify the root of the Tree of Life: 1) An empirical Sankoff parsimony (ESP) model (Harish and Kurland, 2017), which is a nonstationary and directional evolution model; and 2) An a
We recently analyzed the robustness of competing evolution models developed to identify the root of the Tree of Life: 1) An empirical Sankof …
Mitochondrial genomes are retained by selective constraints on protein targeting.
Björkholm P, Harish A, Hagström E, Ernst AM, Andersson SG. Björkholm P, et al. Among authors: harish a. Proc Natl Acad Sci U S A. 2015 Aug 18;112(33):10154-61. doi: 10.1073/pnas.1421372112. Epub 2015 Jul 20. Proc Natl Acad Sci U S A. 2015. PMID: 26195779 Free PMC article.
What is an archaeon and are the Archaea really unique?
Harish A. Harish A. PeerJ. 2018 Oct 18;6:e5770. doi: 10.7717/peerj.5770. eCollection 2018. PeerJ. 2018. PMID: 30357005 Free PMC article.
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