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GEIGER: investigating evolutionary radiations.
Harmon LJ, Weir JT, Brock CD, Glor RE, Challenger W. Harmon LJ, et al. Bioinformatics. 2008 Jan 1;24(1):129-31. doi: 10.1093/bioinformatics/btm538. Epub 2007 Nov 15. Bioinformatics. 2008. PMID: 18006550
Macroevolutionary diversification rates show time dependency.
Henao Diaz LF, Harmon LJ, Sugawara MTC, Miller ET, Pennell MW. Henao Diaz LF, et al. Among authors: harmon lj. Proc Natl Acad Sci U S A. 2019 Apr 9;116(15):7403-7408. doi: 10.1073/pnas.1818058116. Epub 2019 Mar 25. Proc Natl Acad Sci U S A. 2019. PMID: 30910958 Free PMC article.
Deciphering the Interdependence between Ecological and Evolutionary Networks.
Melián CJ, Matthews B, de Andreazzi CS, Rodríguez JP, Harmon LJ, Fortuna MA. Melián CJ, et al. Among authors: harmon lj. Trends Ecol Evol. 2018 Jul;33(7):504-512. doi: 10.1016/j.tree.2018.04.009. Epub 2018 May 24. Trends Ecol Evol. 2018. PMID: 29804936
Evolution: Contingent Predictability in Mammalian Evolution.
Harmon LJ. Harmon LJ. Curr Biol. 2017 Jun 5;27(11):R425-R428. doi: 10.1016/j.cub.2017.04.013. Curr Biol. 2017. PMID: 28586669
Ecological and evolutionary effects of stickleback on community structure.
Des Roches S, Shurin JB, Schluter D, Harmon LJ. Des Roches S, et al. PLoS One. 2013;8(4):e59644. doi: 10.1371/journal.pone.0059644. Epub 2013 Apr 3. PLoS One. 2013. PMID: 23573203 Free PMC article.
Evolutionary diversification in stickleback affects ecosystem functioning.
Harmon LJ, Matthews B, Des Roches S, Chase JM, Shurin JB, Schluter D. Harmon LJ, et al. Nature. 2009 Apr 30;458(7242):1167-70. doi: 10.1038/nature07974. Epub 2009 Apr 1. Nature. 2009. PMID: 19339968
geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees.
Pennell MW, Eastman JM, Slater GJ, Brown JW, Uyeda JC, FitzJohn RG, Alfaro ME, Harmon LJ. Pennell MW, et al. Bioinformatics. 2014 Aug 1;30(15):2216-8. doi: 10.1093/bioinformatics/btu181. Epub 2014 Apr 10. Bioinformatics. 2014. PMID: 24728855
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