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Developmental milestones punctuate gene expression in the Caenorhabditis embryo.
Levin M, Hashimshony T, Wagner F, Yanai I. Levin M, et al. Among authors: hashimshony t. Dev Cell. 2012 May 15;22(5):1101-8. doi: 10.1016/j.devcel.2012.04.004. Epub 2012 May 3. Dev Cell. 2012. PMID: 22560298
Revealing developmental networks by comparative transcriptomics.
Hashimshony T, Yanai I. Hashimshony T, et al. Transcription. 2010 Nov;1(3):154-158. doi: 10.4161/trns.1.3.13190. Epub 2010 Jul 27. Transcription. 2010. PMID: 21326891 Free PMC article.
Core promoter T-blocks correlate with gene expression levels in C. elegans.
Grishkevich V, Hashimshony T, Yanai I. Grishkevich V, et al. Among authors: hashimshony t. Genome Res. 2011 May;21(5):707-17. doi: 10.1101/gr.113381.110. Epub 2011 Mar 2. Genome Res. 2011. PMID: 21367940 Free PMC article.
A genomic bias for genotype-environment interactions in C. elegans.
Grishkevich V, Ben-Elazar S, Hashimshony T, Schott DH, Hunter CP, Yanai I. Grishkevich V, et al. Among authors: hashimshony t. Mol Syst Biol. 2012 Jun 5;8:587. doi: 10.1038/msb.2012.19. Mol Syst Biol. 2012. PMID: 22669615 Free PMC article.
CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification.
Hashimshony T, Wagner F, Sher N, Yanai I. Hashimshony T, et al. Cell Rep. 2012 Sep 27;2(3):666-73. doi: 10.1016/j.celrep.2012.08.003. Epub 2012 Aug 30. Cell Rep. 2012. PMID: 22939981
The roles of the catalytic and noncatalytic activities of Rpd3L and Rpd3S in the regulation of gene transcription in yeast.
Yeheskely-Hayon D, Kotler A, Stark M, Hashimshony T, Sagee S, Kassir Y. Yeheskely-Hayon D, et al. Among authors: hashimshony t. PLoS One. 2013 Dec 17;8(12):e85088. doi: 10.1371/journal.pone.0085088. eCollection 2013. PLoS One. 2013. PMID: 24358376 Free PMC article.
Spatiotemporal transcriptomics reveals the evolutionary history of the endoderm germ layer.
Hashimshony T, Feder M, Levin M, Hall BK, Yanai I. Hashimshony T, et al. Nature. 2015 Mar 12;519(7542):219-22. doi: 10.1038/nature13996. Epub 2014 Dec 10. Nature. 2015. PMID: 25487147 Free PMC article.
The mid-developmental transition and the evolution of animal body plans.
Levin M, Anavy L, Cole AG, Winter E, Mostov N, Khair S, Senderovich N, Kovalev E, Silver DH, Feder M, Fernandez-Valverde SL, Nakanishi N, Simmons D, Simakov O, Larsson T, Liu SY, Jerafi-Vider A, Yaniv K, Ryan JF, Martindale MQ, Rink JC, Arendt D, Degnan SM, Degnan BM, Hashimshony T, Yanai I. Levin M, et al. Among authors: hashimshony t. Nature. 2016 Mar 31;531(7596):637-641. doi: 10.1038/nature16994. Epub 2016 Feb 17. Nature. 2016. PMID: 26886793 Free PMC article.
CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq.
Hashimshony T, Senderovich N, Avital G, Klochendler A, de Leeuw Y, Anavy L, Gennert D, Li S, Livak KJ, Rozenblatt-Rosen O, Dor Y, Regev A, Yanai I. Hashimshony T, et al. Genome Biol. 2016 Apr 28;17:77. doi: 10.1186/s13059-016-0938-8. Genome Biol. 2016. PMID: 27121950 Free PMC article.
scDual-Seq: mapping the gene regulatory program of Salmonella infection by host and pathogen single-cell RNA-sequencing.
Avital G, Avraham R, Fan A, Hashimshony T, Hung DT, Yanai I. Avital G, et al. Among authors: hashimshony t. Genome Biol. 2017 Oct 27;18(1):200. doi: 10.1186/s13059-017-1340-x. Genome Biol. 2017. PMID: 29073931 Free PMC article.
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