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High-complexity regions in mammalian genomes are enriched for developmental genes.
Pirogov A, Pfaffelhuber P, Börsch-Haubold A, Haubold B. Pirogov A, et al. Among authors: haubold b. Bioinformatics. 2019 Jun 1;35(11):1813-1819. doi: 10.1093/bioinformatics/bty922. Bioinformatics. 2019. PMID: 30395202 Free PMC article.
An alignment-free test for recombination.
Haubold B, Krause L, Horn T, Pfaffelhuber P. Haubold B, et al. Bioinformatics. 2013 Dec 15;29(24):3121-7. doi: 10.1093/bioinformatics/btt550. Epub 2013 Sep 23. Bioinformatics. 2013. PMID: 24064419 Free PMC article.
Alignment-free estimation of nucleotide diversity.
Haubold B, Reed FA, Pfaffelhuber P. Haubold B, et al. Bioinformatics. 2011 Feb 15;27(4):449-55. doi: 10.1093/bioinformatics/btq689. Epub 2010 Dec 14. Bioinformatics. 2011. PMID: 21156730
How repetitive are genomes?
Haubold B, Wiehe T. Haubold B, et al. BMC Bioinformatics. 2006 Dec 22;7:541. doi: 10.1186/1471-2105-7-541. BMC Bioinformatics. 2006. PMID: 17187668 Free PMC article.
Alignment-free phylogenetics and population genetics.
Haubold B. Haubold B. Brief Bioinform. 2014 May;15(3):407-18. doi: 10.1093/bib/bbt083. Epub 2013 Nov 29. Brief Bioinform. 2014. PMID: 24291823 Review.
Alignment-free detection of local similarity among viral and bacterial genomes.
Domazet-Lošo M, Haubold B. Domazet-Lošo M, et al. Bioinformatics. 2011 Jun 1;27(11):1466-72. doi: 10.1093/bioinformatics/btr176. Epub 2011 Apr 6. Bioinformatics. 2011. PMID: 21471011
Efficient estimation of pairwise distances between genomes.
Domazet-Loso M, Haubold B. Domazet-Loso M, et al. Bioinformatics. 2009 Dec 15;25(24):3221-7. doi: 10.1093/bioinformatics/btp590. Epub 2009 Oct 13. Bioinformatics. 2009. PMID: 19825795
CONTACT: haubold@evolbio.mpg.de Supplementary informations: Supplementary data are available at Bioinformatics online....
CONTACT: haubold@evolbio.mpg.de Supplementary informations: Supplementary data are available at Bioinformatics online....
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