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Thermodynamics of GTP and GDP binding to bacterial initiation factor 2 suggests two types of structural transitions.
Hauryliuk V, Mitkevich VA, Draycheva A, Tankov S, Shyp V, Ermakov A, Kulikova AA, Makarov AA, Ehrenberg M. Hauryliuk V, et al. J Mol Biol. 2009 Dec 11;394(4):621-6. doi: 10.1016/j.jmb.2009.10.015. Epub 2009 Oct 22. J Mol Biol. 2009. PMID: 19837086
Evolutionary and genetic analyses of mitochondrial translation initiation factors identify the missing mitochondrial IF3 in S. cerevisiae.
Atkinson GC, Kuzmenko A, Kamenski P, Vysokikh MY, Lakunina V, Tankov S, Smirnova E, Soosaar A, Tenson T, Hauryliuk V. Atkinson GC, et al. Nucleic Acids Res. 2012 Jul;40(13):6122-34. doi: 10.1093/nar/gks272. Epub 2012 Mar 28. Nucleic Acids Res. 2012. PMID: 22457064 Free PMC article.
Positive allosteric feedback regulation of the stringent response enzyme RelA by its product.
Shyp V, Tankov S, Ermakov A, Kudrin P, English BP, Ehrenberg M, Tenson T, Elf J, Hauryliuk V. Shyp V, et al. EMBO Rep. 2012 Sep;13(9):835-9. doi: 10.1038/embor.2012.106. Epub 2012 Jul 20. EMBO Rep. 2012. PMID: 22814757 Free PMC article.
An evolutionary ratchet leading to loss of elongation factors in eukaryotes.
Atkinson GC, Kuzmenko A, Chicherin I, Soosaar A, Tenson T, Carr M, Kamenski P, Hauryliuk V. Atkinson GC, et al. BMC Evol Biol. 2014 Feb 24;14(1):35. doi: 10.1186/1471-2148-14-35. BMC Evol Biol. 2014. PMID: 24564225 Free PMC article.
Recent functional insights into the role of (p)ppGpp in bacterial physiology.
Hauryliuk V, Atkinson GC, Murakami KS, Tenson T, Gerdes K. Hauryliuk V, et al. Nat Rev Microbiol. 2015 May;13(5):298-309. doi: 10.1038/nrmicro3448. Epub 2015 Apr 8. Nat Rev Microbiol. 2015. PMID: 25853779 Free PMC article. Review.
From (p)ppGpp to (pp)pGpp: Characterization of Regulatory Effects of pGpp Synthesized by the Small Alarmone Synthetase of Enterococcus faecalis.
Gaca AO, Kudrin P, Colomer-Winter C, Beljantseva J, Liu K, Anderson B, Wang JD, Rejman D, Potrykus K, Cashel M, Hauryliuk V, Lemos JA. Gaca AO, et al. J Bacteriol. 2015 Sep;197(18):2908-19. doi: 10.1128/JB.00324-15. Epub 2015 Jun 29. J Bacteriol. 2015. PMID: 26124242 Free PMC article.
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