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Small Alarmone Synthetases as novel bacterial RNA-binding proteins.
Hauryliuk V, Atkinson GC. Hauryliuk V, et al. RNA Biol. 2017 Dec 2;14(12):1695-1699. doi: 10.1080/15476286.2017.1367889. Epub 2017 Oct 3. RNA Biol. 2017. PMID: 28820325 Free PMC article. Review.
Thermodynamics of GTP and GDP binding to bacterial initiation factor 2 suggests two types of structural transitions.
Hauryliuk V, Mitkevich VA, Draycheva A, Tankov S, Shyp V, Ermakov A, Kulikova AA, Makarov AA, Ehrenberg M. Hauryliuk V, et al. J Mol Biol. 2009 Dec 11;394(4):621-6. doi: 10.1016/j.jmb.2009.10.015. Epub 2009 Oct 22. J Mol Biol. 2009. PMID: 19837086
Thermodynamic characterization of ppGpp binding to EF-G or IF2 and of initiator tRNA binding to free IF2 in the presence of GDP, GTP, or ppGpp.
Mitkevich VA, Ermakov A, Kulikova AA, Tankov S, Shyp V, Soosaar A, Tenson T, Makarov AA, Ehrenberg M, Hauryliuk V. Mitkevich VA, et al. J Mol Biol. 2010 Oct 8;402(5):838-46. doi: 10.1016/j.jmb.2010.08.016. Epub 2010 Aug 14. J Mol Biol. 2010. PMID: 20713063
Single-molecule investigations of the stringent response machinery in living bacterial cells.
English BP, Hauryliuk V, Sanamrad A, Tankov S, Dekker NH, Elf J. English BP, et al. Proc Natl Acad Sci U S A. 2011 Aug 2;108(31):E365-73. doi: 10.1073/pnas.1102255108. Epub 2011 Jul 5. Proc Natl Acad Sci U S A. 2011. PMID: 21730169 Free PMC article.
Positive allosteric feedback regulation of the stringent response enzyme RelA by its product.
Shyp V, Tankov S, Ermakov A, Kudrin P, English BP, Ehrenberg M, Tenson T, Elf J, Hauryliuk V. Shyp V, et al. EMBO Rep. 2012 Sep;13(9):835-9. doi: 10.1038/embor.2012.106. Epub 2012 Jul 20. EMBO Rep. 2012. PMID: 22814757 Free PMC article.
GTPases IF2 and EF-G bind GDP and the SRL RNA in a mutually exclusive manner.
Mitkevich VA, Shyp V, Petrushanko IY, Soosaar A, Atkinson GC, Tenson T, Makarov AA, Hauryliuk V. Mitkevich VA, et al. Sci Rep. 2012;2:843. doi: 10.1038/srep00843. Epub 2012 Nov 13. Sci Rep. 2012. PMID: 23150791 Free PMC article.
Recent functional insights into the role of (p)ppGpp in bacterial physiology.
Hauryliuk V, Atkinson GC, Murakami KS, Tenson T, Gerdes K. Hauryliuk V, et al. Nat Rev Microbiol. 2015 May;13(5):298-309. doi: 10.1038/nrmicro3448. Epub 2015 Apr 8. Nat Rev Microbiol. 2015. PMID: 25853779 Free PMC article. Review.
From (p)ppGpp to (pp)pGpp: Characterization of Regulatory Effects of pGpp Synthesized by the Small Alarmone Synthetase of Enterococcus faecalis.
Gaca AO, Kudrin P, Colomer-Winter C, Beljantseva J, Liu K, Anderson B, Wang JD, Rejman D, Potrykus K, Cashel M, Hauryliuk V, Lemos JA. Gaca AO, et al. J Bacteriol. 2015 Sep;197(18):2908-19. doi: 10.1128/JB.00324-15. Epub 2015 Jun 29. J Bacteriol. 2015. PMID: 26124242 Free PMC article.
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