Haussler D - Search Results

1

An RNA gene expressed during cortical development evolved rapidly in humans.

Pollard KS, Salama SR, Lambert N, Lambot MA, Coppens S, Pedersen JS, Katzman S, King B, Onodera C, Siepel A, Kern AD, Dehay C, Igel H, Ares M Jr, Vanderhaeghen P, Haussler D. Pollard KS, et al. Among authors: haussler d. Nature. 2006 Sep 14;443(7108):167-72. doi: 10.1038/nature05113. Epub 2006 Aug 16. Nature. 2006. PMID: 16915236

2

Genome-wide bioinformatic and molecular analysis of introns in Saccharomyces cerevisiae.

Spingola M, Grate L, Haussler D, Ares M Jr. Spingola M, et al. Among authors: haussler d. RNA. 1999 Feb;5(2):221-34. doi: 10.1017/s1355838299981682. RNA. 1999. PMID: 10024174 Free PMC article.

3

Knowledge-based analysis of microarray gene expression data by using support vector machines.

Brown MP, Grundy WN, Lin D, Cristianini N, Sugnet CW, Furey TS, Ares M Jr, Haussler D. Brown MP, et al. Among authors: haussler d. Proc Natl Acad Sci U S A. 2000 Jan 4;97(1):262-7. doi: 10.1073/pnas.97.1.262. Proc Natl Acad Sci U S A. 2000. PMID: 10618406 Free PMC article.

4

Phylogenetic estimation of context-dependent substitution rates by maximum likelihood.

Siepel A, Haussler D. Siepel A, et al. Among authors: haussler d. Mol Biol Evol. 2004 Mar;21(3):468-88. doi: 10.1093/molbev/msh039. Epub 2003 Dec 5. Mol Biol Evol. 2004. PMID: 14660683

5

Transcriptome and genome conservation of alternative splicing events in humans and mice.

Sugnet CW, Kent WJ, Ares M Jr, Haussler D. Sugnet CW, et al. Among authors: haussler d. Pac Symp Biocomput. 2004:66-77. doi: 10.1142/9789812704856_0007. Pac Symp Biocomput. 2004. PMID: 14992493 Free article.

6

The UCSC Genome Browser Database: update 2006.

Hinrichs AS, Karolchik D, Baertsch R, Barber GP, Bejerano G, Clawson H, Diekhans M, Furey TS, Harte RA, Hsu F, Hillman-Jackson J, Kuhn RM, Pedersen JS, Pohl A, Raney BJ, Rosenbloom KR, Siepel A, Smith KE, Sugnet CW, Sultan-Qurraie A, Thomas DJ, Trumbower H, Weber RJ, Weirauch M, Zweig AS, Haussler D, Kent WJ. Hinrichs AS, et al. Among authors: haussler d. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D590-8. doi: 10.1093/nar/gkj144. Nucleic Acids Res. 2006. PMID: 16381938 Free PMC article.

7

Unusual intron conservation near tissue-regulated exons found by splicing microarrays.

Sugnet CW, Srinivasan K, Clark TA, O'Brien G, Cline MS, Wang H, Williams A, Kulp D, Blume JE, Haussler D, Ares M Jr. Sugnet CW, et al. Among authors: haussler d. PLoS Comput Biol. 2006 Jan;2(1):e4. doi: 10.1371/journal.pcbi.0020004. Epub 2006 Jan 20. PLoS Comput Biol. 2006. PMID: 16424921 Free PMC article.

8

A distal enhancer and an ultraconserved exon are derived from a novel retroposon.

Bejerano G, Lowe CB, Ahituv N, King B, Siepel A, Salama SR, Rubin EM, Kent WJ, Haussler D. Bejerano G, et al. Among authors: haussler d. Nature. 2006 May 4;441(7089):87-90. doi: 10.1038/nature04696. Epub 2006 Apr 16. Nature. 2006. PMID: 16625209

9

Identification and classification of conserved RNA secondary structures in the human genome.

Pedersen JS, Bejerano G, Siepel A, Rosenbloom K, Lindblad-Toh K, Lander ES, Kent J, Miller W, Haussler D. Pedersen JS, et al. Among authors: haussler d. PLoS Comput Biol. 2006 Apr;2(4):e33. doi: 10.1371/journal.pcbi.0020033. Epub 2006 Apr 21. PLoS Comput Biol. 2006. PMID: 16628248 Free PMC article.

10

Forces shaping the fastest evolving regions in the human genome.

Pollard KS, Salama SR, King B, Kern AD, Dreszer T, Katzman S, Siepel A, Pedersen JS, Bejerano G, Baertsch R, Rosenbloom KR, Kent J, Haussler D. Pollard KS, et al. Among authors: haussler d. PLoS Genet. 2006 Oct 13;2(10):e168. doi: 10.1371/journal.pgen.0020168. Epub 2006 Aug 23. PLoS Genet. 2006. PMID: 17040131 Free PMC article.

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