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Novel miniature transposable elements in thermophilic Synechococcus strains and their impact on an environmental population.
Nelson WC, Bhaya D, Heidelberg JF. Nelson WC, et al. Among authors: heidelberg jf. J Bacteriol. 2012 Jul;194(14):3636-42. doi: 10.1128/JB.00333-12. Epub 2012 May 4. J Bacteriol. 2012. PMID: 22563047 Free PMC article.
Gene expression analysis of energy metabolism mutants of Desulfovibrio vulgaris Hildenborough indicates an important role for alcohol dehydrogenase.
Haveman SA, Brunelle V, Voordouw JK, Voordouw G, Heidelberg JF, Rabus R. Haveman SA, et al. Among authors: heidelberg jf. J Bacteriol. 2003 Aug;185(15):4345-53. doi: 10.1128/jb.185.15.4345-4353.2003. J Bacteriol. 2003. PMID: 12867442 Free PMC article.
Metagenomic analysis of a complex marine planktonic thaumarchaeal community from the Gulf of Maine.
Tully BJ, Nelson WC, Heidelberg JF. Tully BJ, et al. Among authors: heidelberg jf. Environ Microbiol. 2012 Jan;14(1):254-67. doi: 10.1111/j.1462-2920.2011.02628.x. Epub 2011 Nov 3. Environ Microbiol. 2012. PMID: 22050608
Comparative genomics of planktonic Flavobacteriaceae from the Gulf of Maine using metagenomic data.
Tully BJ, Sachdeva R, Heidelberg KB, Heidelberg JF. Tully BJ, et al. Among authors: heidelberg jf. Microbiome. 2014 Sep 5;2:34. doi: 10.1186/2049-2618-2-34. eCollection 2014. Microbiome. 2014. PMID: 25258679 Free PMC article.
Germ warfare in a microbial mat community: CRISPRs provide insights into the co-evolution of host and viral genomes.
Heidelberg JF, Nelson WC, Schoenfeld T, Bhaya D. Heidelberg JF, et al. PLoS One. 2009;4(1):e4169. doi: 10.1371/journal.pone.0004169. Epub 2009 Jan 9. PLoS One. 2009. PMID: 19132092 Free PMC article.
Analysis of insertion sequences in thermophilic cyanobacteria: exploring the mechanisms of establishing, maintaining, and withstanding high insertion sequence abundance.
Nelson WC, Wollerman L, Bhaya D, Heidelberg JF. Nelson WC, et al. Among authors: heidelberg jf. Appl Environ Microbiol. 2011 Aug;77(15):5458-66. doi: 10.1128/AEM.05090-11. Epub 2011 Jun 10. Appl Environ Microbiol. 2011. PMID: 21666019 Free PMC article.
Complete and draft genome sequences of six members of the Aquificales.
Reysenbach AL, Hamamura N, Podar M, Griffiths E, Ferreira S, Hochstein R, Heidelberg J, Johnson J, Mead D, Pohorille A, Sarmiento M, Schweighofer K, Seshadri R, Voytek MA. Reysenbach AL, et al. J Bacteriol. 2009 Mar;191(6):1992-3. doi: 10.1128/JB.01645-08. Epub 2009 Jan 9. J Bacteriol. 2009. PMID: 19136599 Free PMC article.
Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage.
Miller ES, Heidelberg JF, Eisen JA, Nelson WC, Durkin AS, Ciecko A, Feldblyum TV, White O, Paulsen IT, Nierman WC, Lee J, Szczypinski B, Fraser CM. Miller ES, et al. Among authors: heidelberg jf. J Bacteriol. 2003 Sep;185(17):5220-33. doi: 10.1128/jb.185.17.5220-5233.2003. J Bacteriol. 2003. PMID: 12923095 Free PMC article.
Genome sequence of Aeromonas hydrophila ATCC 7966T: jack of all trades.
Seshadri R, Joseph SW, Chopra AK, Sha J, Shaw J, Graf J, Haft D, Wu M, Ren Q, Rosovitz MJ, Madupu R, Tallon L, Kim M, Jin S, Vuong H, Stine OC, Ali A, Horneman AJ, Heidelberg JF. Seshadri R, et al. Among authors: heidelberg jf. J Bacteriol. 2006 Dec;188(23):8272-82. doi: 10.1128/JB.00621-06. Epub 2006 Sep 15. J Bacteriol. 2006. PMID: 16980456 Free PMC article.
Trichodesmium genome maintains abundant, widespread noncoding DNA in situ, despite oligotrophic lifestyle.
Walworth N, Pfreundt U, Nelson WC, Mincer T, Heidelberg JF, Fu F, Waterbury JB, Glavina del Rio T, Goodwin L, Kyrpides NC, Land ML, Woyke T, Hutchins DA, Hess WR, Webb EA. Walworth N, et al. Among authors: heidelberg jf. Proc Natl Acad Sci U S A. 2015 Apr 7;112(14):4251-6. doi: 10.1073/pnas.1422332112. Epub 2015 Mar 23. Proc Natl Acad Sci U S A. 2015. PMID: 25831533 Free PMC article.
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