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Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing.
Saito MA, Bertrand EM, Duffy ME, Gaylord DA, Held NA, Hervey WJ 4th, Hettich RL, Jagtap PD, Janech MG, Kinkade DB, Leary DH, McIlvin MR, Moore EK, Morris RM, Neely BA, Nunn BL, Saunders JK, Shepherd AI, Symmonds NI, Walsh DA. Saito MA, et al. Among authors: held na. J Proteome Res. 2019 Apr 5;18(4):1461-1476. doi: 10.1021/acs.jproteome.8b00761. Epub 2019 Mar 12. J Proteome Res. 2019. PMID: 30702898 Free PMC article. Review.
Development of an Ocean Protein Portal for Interactive Discovery and Education.
Saito MA, Saunders JK, Chagnon M, Gaylord DA, Shepherd A, Held NA, Dupont C, Symmonds N, York A, Charron M, Kinkade DB. Saito MA, et al. Among authors: held na. J Proteome Res. 2021 Jan 1;20(1):326-336. doi: 10.1021/acs.jproteome.0c00382. Epub 2020 Dec 17. J Proteome Res. 2021. PMID: 32897077 Free PMC article.
METATRYP v 2.0: Metaproteomic Least Common Ancestor Analysis for Taxonomic Inference Using Specialized Sequence Assemblies-Standalone Software and Web Servers for Marine Microorganisms and Coronaviruses.
Saunders JK, Gaylord DA, Held NA, Symmonds N, Dupont CL, Shepherd A, Kinkade DB, Saito MA. Saunders JK, et al. Among authors: held na. J Proteome Res. 2020 Nov 6;19(11):4718-4729. doi: 10.1021/acs.jproteome.0c00385. Epub 2020 Sep 23. J Proteome Res. 2020. PMID: 32897080
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