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On the performance of de novo pathway enrichment.
Batra R, Alcaraz N, Gitzhofer K, Pauling J, Ditzel HJ, Hellmuth M, Baumbach J, List M. Batra R, et al. Among authors: hellmuth m. NPJ Syst Biol Appl. 2017 Mar 3;3:6. doi: 10.1038/s41540-017-0007-2. eCollection 2017. NPJ Syst Biol Appl. 2017. PMID: 28649433 Free PMC article.
Generic Context-Aware Group Contributions.
Flamm C, Hellmuth M, Merkle D, Nojgaard N, Stadler PF. Flamm C, et al. Among authors: hellmuth m. IEEE/ACM Trans Comput Biol Bioinform. 2022 Jan-Feb;19(1):429-442. doi: 10.1109/TCBB.2020.2998948. Epub 2022 Feb 3. IEEE/ACM Trans Comput Biol Bioinform. 2022. PMID: 32750852
Time-consistent reconciliation maps and forbidden time travel.
Nøjgaard N, Geiß M, Merkle D, Stadler PF, Wieseke N, Hellmuth M. Nøjgaard N, et al. Among authors: hellmuth m. Algorithms Mol Biol. 2018 Feb 6;13:2. doi: 10.1186/s13015-018-0121-8. eCollection 2018. Algorithms Mol Biol. 2018. PMID: 29441122 Free PMC article.
Orthology relations, symbolic ultrametrics, and cographs.
Hellmuth M, Hernandez-Rosales M, Huber KT, Moulton V, Stadler PF, Wieseke N. Hellmuth M, et al. J Math Biol. 2013 Jan;66(1-2):399-420. doi: 10.1007/s00285-012-0525-x. Epub 2012 Mar 29. J Math Biol. 2013. PMID: 22456957
39 results