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TOPCONS: consensus prediction of membrane protein topology.
Bernsel A, Viklund H, Hennerdal A, Elofsson A. Bernsel A, et al. Among authors: hennerdal a. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W465-8. doi: 10.1093/nar/gkp363. Epub 2009 May 8. Nucleic Acids Res. 2009. PMID: 19429891 Free PMC article.
A guideline to proteome-wide α-helical membrane protein topology predictions.
Tsirigos KD, Hennerdal A, Käll L, Elofsson A. Tsirigos KD, et al. Among authors: hennerdal a. Proteomics. 2012 Aug;12(14):2282-94. doi: 10.1002/pmic.201100495. Proteomics. 2012. PMID: 22685073
Rapid membrane protein topology prediction.
Hennerdal A, Elofsson A. Hennerdal A, et al. Bioinformatics. 2011 May 1;27(9):1322-3. doi: 10.1093/bioinformatics/btr119. Bioinformatics. 2011. PMID: 21493661 Free PMC article.
Internal duplications in α-helical membrane protein topologies are common but the nonduplicated forms are rare.
Hennerdal A, Falk J, Lindahl E, Elofsson A. Hennerdal A, et al. Protein Sci. 2010 Dec;19(12):2305-18. doi: 10.1002/pro.510. Protein Sci. 2010. PMID: 20882639 Free PMC article.
Membrane insertion of marginally hydrophobic transmembrane helices depends on sequence context.
Hedin LE, Ojemalm K, Bernsel A, Hennerdal A, Illergård K, Enquist K, Kauko A, Cristobal S, von Heijne G, Lerch-Bader M, Nilsson I, Elofsson A. Hedin LE, et al. Among authors: hennerdal a. J Mol Biol. 2010 Feb 12;396(1):221-9. doi: 10.1016/j.jmb.2009.11.036. Epub 2009 Nov 18. J Mol Biol. 2010. PMID: 19931281