Heringa J - Search Results

1

The REPRO server: finding protein internal sequence repeats through the Web.

George RA, Heringa J. George RA, et al. Among authors: heringa j. Trends Biochem Sci. 2000 Oct;25(10):515-7. doi: 10.1016/s0968-0004(00)01643-1. Trends Biochem Sci. 2000. PMID: 11203383 No abstract available.

2

Scooby-domain: prediction of globular domains in protein sequence.

George RA, Lin K, Heringa J. George RA, et al. Among authors: heringa j. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W160-3. doi: 10.1093/nar/gki381. Nucleic Acids Res. 2005. PMID: 15980446 Free PMC article.

3

Global multiple-sequence alignment with repeats.

Sammeth M, Heringa J. Sammeth M, et al. Among authors: heringa j. Proteins. 2006 Jul 1;64(1):263-74. doi: 10.1002/prot.20957. Proteins. 2006. PMID: 16609972

4

Computational methods for protein secondary structure prediction using multiple sequence alignments.

Heringa J. Heringa J. Curr Protein Pept Sci. 2000 Nov;1(3):273-301. doi: 10.2174/1389203003381324. Curr Protein Pept Sci. 2000. PMID: 12369910 Review.

5

Integrating protein secondary structure prediction and multiple sequence alignment.

Simossis VA, Heringa J. Simossis VA, et al. Among authors: heringa j. Curr Protein Pept Sci. 2004 Aug;5(4):249-66. doi: 10.2174/1389203043379675. Curr Protein Pept Sci. 2004. PMID: 15320732 Review.

6

The evolution and recognition of protein sequence repeats.

Heringa J. Heringa J. Comput Chem. 1994 Sep;18(3):233-43. doi: 10.1016/0097-8485(94)85018-6. Comput Chem. 1994. PMID: 7952894

7

KH domains within the FMR1 sequence suggest that fragile X syndrome stems from a defect in RNA metabolism.

Gibson TJ, Rice PM, Thompson JD, Heringa J. Gibson TJ, et al. Among authors: heringa j. Trends Biochem Sci. 1993 Sep;18(9):331-3. doi: 10.1016/0968-0004(93)90068-x. Trends Biochem Sci. 1993. PMID: 7694397 No abstract available.

8

Two strategies for sequence comparison: profile-preprocessed and secondary structure-induced multiple alignment.

Heringa J. Heringa J. Comput Chem. 1999 Jun 15;23(3-4):341-64. doi: 10.1016/s0097-8485(99)00012-1. Comput Chem. 1999. PMID: 10404624

9

Detection of internal repeats: how common are they?

Heringa J. Heringa J. Curr Opin Struct Biol. 1998 Jun;8(3):338-45. doi: 10.1016/s0959-440x(98)80068-7. Curr Opin Struct Biol. 1998. PMID: 9666330 Review.

10

Testing homology with Contact Accepted mutatiOn (CAO): a contact-based Markov model of protein evolution.

Lin K, Kleinjung J, Taylor WR, Heringa J. Lin K, et al. Among authors: heringa j. Comput Biol Chem. 2003 May;27(2):93-102. doi: 10.1016/s1476-9271(03)00022-7. Comput Biol Chem. 2003. PMID: 12821306

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