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127 results
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An analysis of protein domain linkers: their classification and role in protein folding.
George RA, Heringa J. George RA, et al. Among authors: heringa j. Protein Eng. 2002 Nov;15(11):871-9. doi: 10.1093/protein/15.11.871. Protein Eng. 2002. PMID: 12538906
Identifying foldable regions in protein sequence from the hydrophobic signal.
Pang CN, Lin K, Wouters MA, Heringa J, George RA. Pang CN, et al. Among authors: heringa j. Nucleic Acids Res. 2008 Feb;36(2):578-88. doi: 10.1093/nar/gkm1070. Epub 2007 Dec 1. Nucleic Acids Res. 2008. PMID: 18056079 Free PMC article.
Scooby-domain: prediction of globular domains in protein sequence.
George RA, Lin K, Heringa J. George RA, et al. Among authors: heringa j. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W160-3. doi: 10.1093/nar/gki381. Nucleic Acids Res. 2005. PMID: 15980446 Free PMC article.
Computational methods for protein secondary structure prediction using multiple sequence alignments.
Heringa J. Heringa J. Curr Protein Pept Sci. 2000 Nov;1(3):273-301. doi: 10.2174/1389203003381324. Curr Protein Pept Sci. 2000. PMID: 12369910 Review.
Integrating protein secondary structure prediction and multiple sequence alignment.
Simossis VA, Heringa J. Simossis VA, et al. Among authors: heringa j. Curr Protein Pept Sci. 2004 Aug;5(4):249-66. doi: 10.2174/1389203043379675. Curr Protein Pept Sci. 2004. PMID: 15320732 Review.
Increasing thermal stability of subtilisin from mutations suggested by strongly interacting side-chain clusters.
Heringa J, Argos P, Egmond MR, de Vlieg J. Heringa J, et al. Protein Eng. 1995 Jan;8(1):21-30. doi: 10.1093/protein/8.1.21. Protein Eng. 1995. PMID: 7770448
Three-dimensional domain duplication, swapping and stealing.
Heringa J, Taylor WR. Heringa J, et al. Curr Opin Struct Biol. 1997 Jun;7(3):416-21. doi: 10.1016/s0959-440x(97)80060-7. Curr Opin Struct Biol. 1997. PMID: 9204285 Review.
Testing homology with Contact Accepted mutatiOn (CAO): a contact-based Markov model of protein evolution.
Lin K, Kleinjung J, Taylor WR, Heringa J. Lin K, et al. Among authors: heringa j. Comput Biol Chem. 2003 May;27(2):93-102. doi: 10.1016/s1476-9271(03)00022-7. Comput Biol Chem. 2003. PMID: 12821306
A simple and fast secondary structure prediction method using hidden neural networks.
Lin K, Simossis VA, Taylor WR, Heringa J. Lin K, et al. Among authors: heringa j. Bioinformatics. 2005 Jan 15;21(2):152-9. doi: 10.1093/bioinformatics/bth487. Epub 2004 Sep 17. Bioinformatics. 2005. PMID: 15377504
Parallelized multiple alignment.
Kleinjung J, Douglas N, Heringa J. Kleinjung J, et al. Among authors: heringa j. Bioinformatics. 2002 Sep;18(9):1270-1. doi: 10.1093/bioinformatics/18.9.1270. Bioinformatics. 2002. PMID: 12217922
127 results
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