Heringa J - Search Results

1

Measuring non-steady-state metabolic fluxes in starch-converting faecal microbiota in vitro.

Binsl TW, De Graaf AA, Venema K, Heringa J, Maathuis A, De Waard P, Van Beek JH. Binsl TW, et al. Among authors: heringa j. Benef Microbes. 2010 Nov;1(4):391-405. doi: 10.3920/BM2010.0038. Benef Microbes. 2010. PMID: 21831778

2

Computational estimation of tricarboxylic acid cycle fluxes using noisy NMR data from cardiac biopsies.

Hettling H, Alders DJ, Heringa J, Binsl TW, Groeneveld AB, van Beek JH. Hettling H, et al. Among authors: heringa j. BMC Syst Biol. 2013 Aug 21;7:82. doi: 10.1186/1752-0509-7-82. BMC Syst Biol. 2013. PMID: 23965343 Free PMC article.

3

Computational quantification of metabolic fluxes from a single isotope snapshot: application to an animal biopsy.

Binsl TW, Alders DJ, Heringa J, Groeneveld AB, van Beek JH. Binsl TW, et al. Among authors: heringa j. Bioinformatics. 2010 Mar 1;26(5):653-60. doi: 10.1093/bioinformatics/btq018. Epub 2010 Jan 22. Bioinformatics. 2010. PMID: 20097912

4

Executing multicellular differentiation: quantitative predictive modelling of C.elegans vulval development.

Bonzanni N, Krepska E, Feenstra KA, Fokkink W, Kielmann T, Bal H, Heringa J. Bonzanni N, et al. Among authors: heringa j. Bioinformatics. 2009 Aug 15;25(16):2049-56. doi: 10.1093/bioinformatics/btp355. Epub 2009 Jun 10. Bioinformatics. 2009. PMID: 19515963

5

Measuring non-steady-state metabolic fluxes in starch-converting faecal microbiota in vitro.

Binsl TW, De Graaf AA, Venema K, Heringa J, Maathuis A, De Waard P, Van Beek JH. Binsl TW, et al. Among authors: heringa j. Benef Microbes. 2010 Nov;1(4):S1-7. doi: 10.3920/bm.1.4.wx4x52433n3p3000. Benef Microbes. 2010. PMID: 21831768 No abstract available.

6

Tools for computational processing of LC-MS datasets: a user's perspective.

Codrea MC, Jiménez CR, Heringa J, Marchiori E. Codrea MC, et al. Among authors: heringa j. Comput Methods Programs Biomed. 2007 Jun;86(3):281-90. doi: 10.1016/j.cmpb.2007.03.001. Epub 2007 Apr 24. Comput Methods Programs Biomed. 2007. PMID: 17459516

7

Protein secondary structure prediction.

Pirovano W, Heringa J. Pirovano W, et al. Among authors: heringa j. Methods Mol Biol. 2010;609:327-48. doi: 10.1007/978-1-60327-241-4_19. Methods Mol Biol. 2010. PMID: 20221928 Review.

8

Multi-Harmony: detecting functional specificity from sequence alignment.

Brandt BW, Feenstra KA, Heringa J. Brandt BW, et al. Among authors: heringa j. Nucleic Acids Res. 2010 Jul;38(Web Server issue):W35-40. doi: 10.1093/nar/gkq415. Epub 2010 Jun 4. Nucleic Acids Res. 2010. PMID: 20525785 Free PMC article.

9

CLUB-MARTINI: Selecting Favourable Interactions amongst Available Candidates, a Coarse-Grained Simulation Approach to Scoring Docking Decoys.

Hou Q, Lensink MF, Heringa J, Feenstra KA. Hou Q, et al. Among authors: heringa j. PLoS One. 2016 May 11;11(5):e0155251. doi: 10.1371/journal.pone.0155251. eCollection 2016. PLoS One. 2016. PMID: 27166787 Free PMC article.

10

Yves Moreau and Jaap Heringa, on behalf of the ECCB10 organizing and steering committees.

Moreau Y, Heringa J. Moreau Y, et al. Among authors: heringa j. Bioinformatics. 2010 Sep 15;26(18):i412-3. doi: 10.1093/bioinformatics/btq482. Bioinformatics. 2010. PMID: 20823300 Free PMC article. No abstract available.

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