Herrero J - Search Results

1

GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data.

Vaquerizas JM, Conde L, Yankilevich P, Cabezón A, Minguez P, Díaz-Uriarte R, Al-Shahrour F, Herrero J, Dopazo J. Vaquerizas JM, et al. Among authors: herrero j. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W616-20. doi: 10.1093/nar/gki500. Nucleic Acids Res. 2005. PMID: 15980548 Free PMC article.

2

A hierarchical unsupervised growing neural network for clustering gene expression patterns.

Herrero J, Valencia A, Dopazo J. Herrero J, et al. Bioinformatics. 2001 Feb;17(2):126-36. doi: 10.1093/bioinformatics/17.2.126. Bioinformatics. 2001. PMID: 11238068

3

Expression profiles and biological function.

Oliveros JC, Blaschke C, Herrero J, Dopazo J, Valencia A. Oliveros JC, et al. Among authors: herrero j. Genome Inform Ser Workshop Genome Inform. 2000;11:106-17. Genome Inform Ser Workshop Genome Inform. 2000. PMID: 11700592

4

Bioinformatics methods for the analysis of expression arrays: data clustering and information extraction.

Tamames J, Clark D, Herrero J, Dopazo J, Blaschke C, Fernández JM, Oliveros JC, Valencia A. Tamames J, et al. Among authors: herrero j. J Biotechnol. 2002 Sep 25;98(2-3):269-83. doi: 10.1016/s0168-1656(02)00137-2. J Biotechnol. 2002. PMID: 12141992 Review.

5

Identification of genes involved in resistance to interferon-alpha in cutaneous T-cell lymphoma.

Tracey L, Villuendas R, Ortiz P, Dopazo A, Spiteri I, Lombardia L, Rodríguez-Peralto JL, Fernández-Herrera J, Hernández A, Fraga J, Dominguez O, Herrero J, Alonso MA, Dopazo J, Piris MA. Tracey L, et al. Among authors: herrero j. Am J Pathol. 2002 Nov;161(5):1825-37. doi: 10.1016/s0002-9440(10)64459-8. Am J Pathol. 2002. PMID: 12414529 Free PMC article.

6

Combining hierarchical clustering and self-organizing maps for exploratory analysis of gene expression patterns.

Herrero J, Dopazo J. Herrero J, et al. J Proteome Res. 2002 Sep-Oct;1(5):467-70. doi: 10.1021/pr025521v. J Proteome Res. 2002. PMID: 12645919

7

Gene expression data preprocessing.

Herrero J, Díaz-Uriarte R, Dopazo J. Herrero J, et al. Bioinformatics. 2003 Mar 22;19(5):655-6. doi: 10.1093/bioinformatics/btg040. Bioinformatics. 2003. PMID: 12651726

8

Comparing bacterial genomes through conservation profiles.

Martin MJ, Herrero J, Mateos A, Dopazo J. Martin MJ, et al. Among authors: herrero j. Genome Res. 2003 May;13(5):991-8. doi: 10.1101/gr.678303. Epub 2003 Apr 14. Genome Res. 2003. PMID: 12695324 Free PMC article.

9

GEPAS: A web-based resource for microarray gene expression data analysis.

Herrero J, Al-Shahrour F, Díaz-Uriarte R, Mateos A, Vaquerizas JM, Santoyo J, Dopazo J. Herrero J, et al. Nucleic Acids Res. 2003 Jul 1;31(13):3461-7. doi: 10.1093/nar/gkg591. Nucleic Acids Res. 2003. PMID: 12824345 Free PMC article.

10

New challenges in gene expression data analysis and the extended GEPAS.

Herrero J, Vaquerizas JM, Al-Shahrour F, Conde L, Mateos A, Díaz-Uriarte JS, Dopazo J. Herrero J, et al. Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W485-91. doi: 10.1093/nar/gkh421. Nucleic Acids Res. 2004. PMID: 15215434 Free PMC article.

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