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Promoter analysis of Mammalian clock controlled genes.
Bozek K, Kiełbasa SM, Kramer A, Herzel H. Bozek K, et al. Genome Inform. 2007;18:65-74. Genome Inform. 2007. PMID: 18546475
Is there a bias in proteome research?
Mrowka R, Patzak A, Herzel H. Mrowka R, et al. Genome Res. 2001 Dec;11(12):1971-3. doi: 10.1101/gr.206701. Genome Res. 2001. PMID: 11731485
HOMGL-comparing genelists across species and with different accession numbers.
Blüthgen N, Kiełbasa SM, Cajavec B, Herzel H. Blüthgen N, et al. Bioinformatics. 2004 Jan 1;20(1):125-6. doi: 10.1093/bioinformatics/btg379. Bioinformatics. 2004. PMID: 14693820
Bifurcation analysis of the regulatory modules of the mammalian G1/S transition.
Swat M, Kel A, Herzel H. Swat M, et al. Bioinformatics. 2004 Jul 10;20(10):1506-11. doi: 10.1093/bioinformatics/bth110. Bioinformatics. 2004. PMID: 15231543
Modeling feedback loops of the Mammalian circadian oscillator.
Becker-Weimann S, Wolf J, Herzel H, Kramer A. Becker-Weimann S, et al. Biophys J. 2004 Nov;87(5):3023-34. doi: 10.1529/biophysj.104.040824. Epub 2004 Sep 3. Biophys J. 2004. PMID: 15347590 Free PMC article.
The oscillations that are obtained have a 24-h period and are robust toward parameter variations even when the positive feedback is replaced by a constantly expressed activator. ...
The oscillations that are obtained have a 24-h period and are robust toward parameter variations even when the positive feedback is r …
Inferring combinatorial regulation of transcription in silico.
Blüthgen N, Kiełbasa SM, Herzel H. Blüthgen N, et al. Nucleic Acids Res. 2005 Jan 12;33(1):272-9. doi: 10.1093/nar/gki167. Print 2005. Nucleic Acids Res. 2005. PMID: 15647509 Free PMC article.
Entrainment in a model of the mammalian circadian oscillator.
Geier F, Becker-Weimann S, Kramer A, Herzel H. Geier F, et al. J Biol Rhythms. 2005 Feb;20(1):83-93. doi: 10.1177/0748730404269309. J Biol Rhythms. 2005. PMID: 15654073
Prediction of cis-regulatory elements of coregulated genes.
Kiełbase SM, Blüthgen N, Sers C, Schäfer R, Herzel H. Kiełbase SM, et al. Genome Inform. 2004;15(1):117-24. Genome Inform. 2004. PMID: 15712115
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