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11 results
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Constrained geometric simulation of diffusive motion in proteins.
Wells S, Menor S, Hespenheide B, Thorpe MF. Wells S, et al. Among authors: hespenheide b. Phys Biol. 2005 Nov 9;2(4):S127-36. doi: 10.1088/1478-3975/2/4/S07. Phys Biol. 2005. PMID: 16280618
Flexibility and critical hydrogen bonds in cytochrome c.
Thorpe MF, Hespenheide BM, Yang Y, Kuhn LA. Thorpe MF, et al. Among authors: hespenheide bm. Pac Symp Biocomput. 2000:191-202. doi: 10.1142/9789814447331_0018. Pac Symp Biocomput. 2000. PMID: 10902168 Free article.
Protein flexibility using constraints from molecular dynamics simulations.
Mamonova T, Hespenheide B, Straub R, Thorpe MF, Kurnikova M. Mamonova T, et al. Among authors: hespenheide b. Phys Biol. 2005 Nov 9;2(4):S137-47. doi: 10.1088/1478-3975/2/4/S08. Phys Biol. 2005. PMID: 16280619
Protein unfolding: rigidity lost.
Rader AJ, Hespenheide BM, Kuhn LA, Thorpe MF. Rader AJ, et al. Among authors: hespenheide bm. Proc Natl Acad Sci U S A. 2002 Mar 19;99(6):3540-5. doi: 10.1073/pnas.062492699. Epub 2002 Mar 12. Proc Natl Acad Sci U S A. 2002. PMID: 11891336 Free PMC article.
Identifying protein folding cores from the evolution of flexible regions during unfolding.
Hespenheide BM, Rader AJ, Thorpe MF, Kuhn LA. Hespenheide BM, et al. J Mol Graph Model. 2002 Dec;21(3):195-207. doi: 10.1016/s1093-3263(02)00146-8. J Mol Graph Model. 2002. PMID: 12463638
Docking of photosystem I subunit C using a constrained geometric simulation.
Jolley CC, Wells SA, Hespenheide BM, Thorpe MF, Fromme P. Jolley CC, et al. Among authors: hespenheide bm. J Am Chem Soc. 2006 Jul 12;128(27):8803-12. doi: 10.1021/ja0587749. J Am Chem Soc. 2006. PMID: 16819873
Identification of mimotope peptides which bind to the mycotoxin deoxynivalenol-specific monoclonal antibody.
Yuan Q, Pestka JJ, Hespenheide BM, Kuhn LA, Linz JE, Hart LP. Yuan Q, et al. Among authors: hespenheide bm. Appl Environ Microbiol. 1999 Aug;65(8):3279-86. doi: 10.1128/AEM.65.8.3279-3286.1999. Appl Environ Microbiol. 1999. PMID: 10427007 Free PMC article.
Prediction of the active-site structure and NAD(+) binding in SQD1, a protein essential for sulfolipid biosynthesis in Arabidopsis.
Essigmann B, Hespenheide BM, Kuhn LA, Benning C. Essigmann B, et al. Among authors: hespenheide bm. Arch Biochem Biophys. 1999 Sep 1;369(1):30-41. doi: 10.1006/abbi.1999.1344. Arch Biochem Biophys. 1999. PMID: 10462438
Discovery of a significant, nontopological preference for antiparallel alignment of helices with parallel regions in sheets.
Hespenheide BM, Kuhn LA. Hespenheide BM, et al. Protein Sci. 2003 May;12(5):1119-25. doi: 10.1110/ps.0238803. Protein Sci. 2003. PMID: 12717033 Free PMC article.
The Database of Macromolecular Motions: new features added at the decade mark.
Flores S, Echols N, Milburn D, Hespenheide B, Keating K, Lu J, Wells S, Yu EZ, Thorpe M, Gerstein M. Flores S, et al. Among authors: hespenheide b. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D296-301. doi: 10.1093/nar/gkj046. Nucleic Acids Res. 2006. PMID: 16381870 Free PMC article.
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