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132 results
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T-Coffee: A novel method for fast and accurate multiple sequence alignment.
Notredame C, Higgins DG, Heringa J. Notredame C, et al. Among authors: higgins dg. J Mol Biol. 2000 Sep 8;302(1):205-17. doi: 10.1006/jmbi.2000.4042. J Mol Biol. 2000. PMID: 10964570
Multiple sequence alignment using ClustalW and ClustalX.
Thompson JD, Gibson TJ, Higgins DG. Thompson JD, et al. Among authors: higgins dg. Curr Protoc Bioinformatics. 2002 Aug;Chapter 2:Unit 2.3. doi: 10.1002/0471250953.bi0203s00. Curr Protoc Bioinformatics. 2002. PMID: 18792934
APDB: a novel measure for benchmarking sequence alignment methods without reference alignments.
O'Sullivan O, Zehnder M, Higgins D, Bucher P, Grosdidier A, Notredame C. O'Sullivan O, et al. Bioinformatics. 2003;19 Suppl 1:i215-21. doi: 10.1093/bioinformatics/btg1029. Bioinformatics. 2003. PMID: 12855461
Multiple sequence alignment.
Higgins DG, Taylor WR. Higgins DG, et al. Methods Mol Biol. 2000;143:1-18. doi: 10.1385/1-59259-368-2:1. Methods Mol Biol. 2000. PMID: 11084899 No abstract available.
SAGA: sequence alignment by genetic algorithm.
Notredame C, Higgins DG. Notredame C, et al. Among authors: higgins dg. Nucleic Acids Res. 1996 Apr 15;24(8):1515-24. doi: 10.1093/nar/24.8.1515. Nucleic Acids Res. 1996. PMID: 8628686 Free PMC article.
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
Thompson JD, Higgins DG, Gibson TJ. Thompson JD, et al. Among authors: higgins dg. Nucleic Acids Res. 1994 Nov 11;22(22):4673-80. doi: 10.1093/nar/22.22.4673. Nucleic Acids Res. 1994. PMID: 7984417 Free PMC article.
Multiple sequence alignment with Clustal X.
Jeanmougin F, Thompson JD, Gouy M, Higgins DG, Gibson TJ. Jeanmougin F, et al. Among authors: higgins dg. Trends Biochem Sci. 1998 Oct;23(10):403-5. doi: 10.1016/s0968-0004(98)01285-7. Trends Biochem Sci. 1998. PMID: 9810230 No abstract available.
RAGA: RNA sequence alignment by genetic algorithm.
Notredame C, O'Brien EA, Higgins DG. Notredame C, et al. Among authors: higgins dg. Nucleic Acids Res. 1997 Nov 15;25(22):4570-80. doi: 10.1093/nar/25.22.4570. Nucleic Acids Res. 1997. PMID: 9358168 Free PMC article.
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. Thompson JD, et al. Among authors: higgins dg. Nucleic Acids Res. 1997 Dec 15;25(24):4876-82. doi: 10.1093/nar/25.24.4876. Nucleic Acids Res. 1997. PMID: 9396791 Free PMC article.
Improved sensitivity of profile searches through the use of sequence weights and gap excision.
Thompson JD, Higgins DG, Gibson TJ. Thompson JD, et al. Among authors: higgins dg. Comput Appl Biosci. 1994 Feb;10(1):19-29. doi: 10.1093/bioinformatics/10.1.19. Comput Appl Biosci. 1994. PMID: 8193951
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