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CLUSTAL V: improved software for multiple sequence alignment.
Higgins DG, Bleasby AJ, Fuchs R. Higgins DG, et al. Comput Appl Biosci. 1992 Apr;8(2):189-91. doi: 10.1093/bioinformatics/8.2.189. Comput Appl Biosci. 1992. PMID: 1591615
Multiple sequence alignment using ClustalW and ClustalX.
Thompson JD, Gibson TJ, Higgins DG. Thompson JD, et al. Curr Protoc Bioinformatics. 2002 Aug;Chapter 2:Unit 2.3. doi: 10.1002/0471250953.bi0203s00. Curr Protoc Bioinformatics. 2002. PMID: 18792934
Multiple sequence alignment.
Higgins DG, Taylor WR. Higgins DG, et al. Methods Mol Biol. 2000;143:1-18. doi: 10.1385/1-59259-368-2:1. Methods Mol Biol. 2000. PMID: 11084899 No abstract available.
SAGA: sequence alignment by genetic algorithm.
Notredame C, Higgins DG. Notredame C, et al. Nucleic Acids Res. 1996 Apr 15;24(8):1515-24. doi: 10.1093/nar/24.8.1515. Nucleic Acids Res. 1996. PMID: 8628686 Free PMC article.
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
Thompson JD, Higgins DG, Gibson TJ. Thompson JD, et al. Nucleic Acids Res. 1994 Nov 11;22(22):4673-80. doi: 10.1093/nar/22.22.4673. Nucleic Acids Res. 1994. PMID: 7984417 Free PMC article.
T-Coffee: A novel method for fast and accurate multiple sequence alignment.
Notredame C, Higgins DG, Heringa J. Notredame C, et al. J Mol Biol. 2000 Sep 8;302(1):205-17. doi: 10.1006/jmbi.2000.4042. J Mol Biol. 2000. PMID: 10964570
Multiple sequence alignment with Clustal X.
Jeanmougin F, Thompson JD, Gouy M, Higgins DG, Gibson TJ. Jeanmougin F, et al. Trends Biochem Sci. 1998 Oct;23(10):403-5. doi: 10.1016/s0968-0004(98)01285-7. Trends Biochem Sci. 1998. PMID: 9810230 No abstract available.
RAGA: RNA sequence alignment by genetic algorithm.
Notredame C, O'Brien EA, Higgins DG. Notredame C, et al. Nucleic Acids Res. 1997 Nov 15;25(22):4570-80. doi: 10.1093/nar/25.22.4570. Nucleic Acids Res. 1997. PMID: 9358168 Free PMC article.
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. Thompson JD, et al. Nucleic Acids Res. 1997 Dec 15;25(24):4876-82. doi: 10.1093/nar/25.24.4876. Nucleic Acids Res. 1997. PMID: 9396791 Free PMC article.
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