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Clustal W and Clustal X version 2.0.
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG. Larkin MA, et al. Bioinformatics. 2007 Nov 1;23(21):2947-8. doi: 10.1093/bioinformatics/btm404. Epub 2007 Sep 10. Bioinformatics. 2007. PMID: 17846036
Multiple sequence alignment using ClustalW and ClustalX.
Thompson JD, Gibson TJ, Higgins DG. Thompson JD, et al. Curr Protoc Bioinformatics. 2002 Aug;Chapter 2:Unit 2.3. doi: 10.1002/0471250953.bi0203s00. Curr Protoc Bioinformatics. 2002. PMID: 18792934
Multiple sequence alignment.
Higgins DG, Taylor WR. Higgins DG, et al. Methods Mol Biol. 2000;143:1-18. doi: 10.1385/1-59259-368-2:1. Methods Mol Biol. 2000. PMID: 11084899 No abstract available.
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
Thompson JD, Higgins DG, Gibson TJ. Thompson JD, et al. Nucleic Acids Res. 1994 Nov 11;22(22):4673-80. doi: 10.1093/nar/22.22.4673. Nucleic Acids Res. 1994. PMID: 7984417 Free PMC article.
Multiple sequence alignment with Clustal X.
Jeanmougin F, Thompson JD, Gouy M, Higgins DG, Gibson TJ. Jeanmougin F, et al. Trends Biochem Sci. 1998 Oct;23(10):403-5. doi: 10.1016/s0968-0004(98)01285-7. Trends Biochem Sci. 1998. PMID: 9810230 No abstract available.
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. Thompson JD, et al. Nucleic Acids Res. 1997 Dec 15;25(24):4876-82. doi: 10.1093/nar/25.24.4876. Nucleic Acids Res. 1997. PMID: 9396791 Free PMC article.
Interfacing similarity search software with the sequence retrieval system ACNUC.
Higgins DG, Gouy M. Higgins DG, et al. Comput Appl Biosci. 1987 Sep;3(3):239-41. doi: 10.1093/bioinformatics/3.3.239. Comput Appl Biosci. 1987. PMID: 3453234
Fast and sensitive multiple sequence alignments on a microcomputer.
Higgins DG, Sharp PM. Higgins DG, et al. Comput Appl Biosci. 1989 Apr;5(2):151-3. doi: 10.1093/bioinformatics/5.2.151. Comput Appl Biosci. 1989. PMID: 2720464
CLUSTAL V: improved software for multiple sequence alignment.
Higgins DG, Bleasby AJ, Fuchs R. Higgins DG, et al. Comput Appl Biosci. 1992 Apr;8(2):189-91. doi: 10.1093/bioinformatics/8.2.189. Comput Appl Biosci. 1992. PMID: 1591615
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