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CLUSTAL: a package for performing multiple sequence alignment on a microcomputer.
Higgins DG, Sharp PM. Higgins DG, et al. Gene. 1988 Dec 15;73(1):237-44. doi: 10.1016/0378-1119(88)90330-7. Gene. 1988. PMID: 3243435
APDB: a novel measure for benchmarking sequence alignment methods without reference alignments.
O'Sullivan O, Zehnder M, Higgins D, Bucher P, Grosdidier A, Notredame C. O'Sullivan O, et al. Bioinformatics. 2003;19 Suppl 1:i215-21. doi: 10.1093/bioinformatics/btg1029. Bioinformatics. 2003. PMID: 12855461
Molecular evolution of immunoglobulin and fibronectin domains in titin and related muscle proteins.
Kenny PA, Liston EM, Higgins DG. Kenny PA, et al. Among authors: higgins dg. Gene. 1999 May 17;232(1):11-23. doi: 10.1016/s0378-1119(99)00122-5. Gene. 1999. PMID: 10333517
Multiple sequence alignment.
Higgins DG, Taylor WR. Higgins DG, et al. Methods Mol Biol. 2000;143:1-18. doi: 10.1385/1-59259-368-2:1. Methods Mol Biol. 2000. PMID: 11084899 No abstract available.
SAGA: sequence alignment by genetic algorithm.
Notredame C, Higgins DG. Notredame C, et al. Among authors: higgins dg. Nucleic Acids Res. 1996 Apr 15;24(8):1515-24. doi: 10.1093/nar/24.8.1515. Nucleic Acids Res. 1996. PMID: 8628686 Free PMC article.
Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity.
Sharp PM, Cowe E, Higgins DG, Shields DC, Wolfe KH, Wright F. Sharp PM, et al. Among authors: higgins dg. Nucleic Acids Res. 1988 Sep 12;16(17):8207-11. doi: 10.1093/nar/16.17.8207. Nucleic Acids Res. 1988. PMID: 3138659 Free PMC article. Review.
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
Thompson JD, Higgins DG, Gibson TJ. Thompson JD, et al. Among authors: higgins dg. Nucleic Acids Res. 1994 Nov 11;22(22):4673-80. doi: 10.1093/nar/22.22.4673. Nucleic Acids Res. 1994. PMID: 7984417 Free PMC article.
Amino acid-based phylogeny and alignment.
Higgins DG. Higgins DG. Adv Protein Chem. 2000;54:99-135. doi: 10.1016/s0065-3233(00)54004-2. Adv Protein Chem. 2000. PMID: 10829226 Review. No abstract available.
T-Coffee: A novel method for fast and accurate multiple sequence alignment.
Notredame C, Higgins DG, Heringa J. Notredame C, et al. Among authors: higgins dg. J Mol Biol. 2000 Sep 8;302(1):205-17. doi: 10.1006/jmbi.2000.4042. J Mol Biol. 2000. PMID: 10964570
RAGA: RNA sequence alignment by genetic algorithm.
Notredame C, O'Brien EA, Higgins DG. Notredame C, et al. Among authors: higgins dg. Nucleic Acids Res. 1997 Nov 15;25(22):4570-80. doi: 10.1093/nar/25.22.4570. Nucleic Acids Res. 1997. PMID: 9358168 Free PMC article.
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