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Atomic structure of a folate/FAD-dependent tRNA T54 methyltransferase.
Nishimasu H, Ishitani R, Yamashita K, Iwashita C, Hirata A, Hori H, Nureki O. Nishimasu H, et al. Proc Natl Acad Sci U S A. 2009 May 19;106(20):8180-5. doi: 10.1073/pnas.0901330106. Epub 2009 May 5. Proc Natl Acad Sci U S A. 2009. PMID: 19416846 Free PMC article.
Pseudouridine at position 55 in tRNA controls the contents of other modified nucleotides for low-temperature adaptation in the extreme-thermophilic eubacterium Thermus thermophilus.
Ishida K, Kunibayashi T, Tomikawa C, Ochi A, Kanai T, Hirata A, Iwashita C, Hori H. Ishida K, et al. Nucleic Acids Res. 2011 Mar;39(6):2304-18. doi: 10.1093/nar/gkq1180. Epub 2010 Nov 18. Nucleic Acids Res. 2011. PMID: 21097467 Free PMC article.
Cleavage of intron from the standard or non-standard position of the precursor tRNA by the splicing endonuclease of Aeropyrum pernix, a hyper-thermophilic Crenarchaeon, involves a novel RNA recognition site in the Crenarchaea specific loop.
Hirata A, Kitajima T, Hori H. Hirata A, et al. Nucleic Acids Res. 2011 Nov;39(21):9376-89. doi: 10.1093/nar/gkr615. Epub 2011 Aug 16. Nucleic Acids Res. 2011. PMID: 21846775 Free PMC article.
X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity.
Hirata A, Fujishima K, Yamagami R, Kawamura T, Banfield JF, Kanai A, Hori H. Hirata A, et al. Nucleic Acids Res. 2012 Nov 1;40(20):10554-66. doi: 10.1093/nar/gks826. Epub 2012 Aug 31. Nucleic Acids Res. 2012. PMID: 22941657 Free PMC article.
The tRNA recognition mechanism of folate/FAD-dependent tRNA methyltransferase (TrmFO).
Yamagami R, Yamashita K, Nishimasu H, Tomikawa C, Ochi A, Iwashita C, Hirata A, Ishitani R, Nureki O, Hori H. Yamagami R, et al. J Biol Chem. 2012 Dec 14;287(51):42480-94. doi: 10.1074/jbc.M112.390112. Epub 2012 Oct 24. J Biol Chem. 2012. PMID: 23095745 Free PMC article.
The catalytic domain of topological knot tRNA methyltransferase (TrmH) discriminates between substrate tRNA and nonsubstrate tRNA via an induced-fit process.
Ochi A, Makabe K, Yamagami R, Hirata A, Sakaguchi R, Hou YM, Watanabe K, Nureki O, Kuwajima K, Hori H. Ochi A, et al. J Biol Chem. 2013 Aug 30;288(35):25562-74. doi: 10.1074/jbc.M113.485128. Epub 2013 Jul 18. J Biol Chem. 2013. PMID: 23867454 Free PMC article.
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