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Epigenetics and human disease.
Hirst M, Marra MA. Hirst M, et al. Int J Biochem Cell Biol. 2009 Jan;41(1):136-46. doi: 10.1016/j.biocel.2008.09.011. Epub 2008 Sep 24. Int J Biochem Cell Biol. 2009. PMID: 18852064 Review.
Naturally occurring human immunodeficiency virus type 1 long terminal repeats have a frequently observed duplication that binds RBF-2 and represses transcription.
Estable MC, Bell B, Hirst M, Sadowski I. Estable MC, et al. Among authors: hirst m. J Virol. 1998 Aug;72(8):6465-74. doi: 10.1128/JVI.72.8.6465-6474.1998. J Virol. 1998. PMID: 9658089 Free PMC article.
GAL4 is regulated by the RNA polymerase II holoenzyme-associated cyclin-dependent protein kinase SRB10/CDK8.
Hirst M, Kobor MS, Kuriakose N, Greenblatt J, Sadowski I. Hirst M, et al. Mol Cell. 1999 May;3(5):673-8. doi: 10.1016/s1097-2765(00)80360-3. Mol Cell. 1999. PMID: 10360183
A mouse atlas of gene expression: large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells.
Siddiqui AS, Khattra J, Delaney AD, Zhao Y, Astell C, Asano J, Babakaiff R, Barber S, Beland J, Bohacec S, Brown-John M, Chand S, Charest D, Charters AM, Cullum R, Dhalla N, Featherstone R, Gerhard DS, Hoffman B, Holt RA, Hou J, Kuo BY, Lee LL, Lee S, Leung D, Ma K, Matsuo C, Mayo M, McDonald H, Prabhu AL, Pandoh P, Riggins GJ, de Algara TR, Rupert JL, Smailus D, Stott J, Tsai M, Varhol R, Vrljicak P, Wong D, Wu MK, Xie YY, Yang G, Zhang I, Hirst M, Jones SJ, Helgason CD, Simpson EM, Hoodless PA, Marra MA. Siddiqui AS, et al. Among authors: hirst m. Proc Natl Acad Sci U S A. 2005 Dec 20;102(51):18485-90. doi: 10.1073/pnas.0509455102. Epub 2005 Dec 13. Proc Natl Acad Sci U S A. 2005. PMID: 16352711 Free PMC article.
Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach.
Bainbridge MN, Warren RL, Hirst M, Romanuik T, Zeng T, Go A, Delaney A, Griffith M, Hickenbotham M, Magrini V, Mardis ER, Sadar MD, Siddiqui AS, Marra MA, Jones SJ. Bainbridge MN, et al. Among authors: hirst m. BMC Genomics. 2006 Sep 29;7:246. doi: 10.1186/1471-2164-7-246. BMC Genomics. 2006. PMID: 17010196 Free PMC article.
Novel expressed sequences identified in a model of androgen independent prostate cancer.
Quayle SN, Hare H, Delaney AD, Hirst M, Hwang D, Schein JE, Jones SJ, Marra MA, Sadar MD. Quayle SN, et al. Among authors: hirst m. BMC Genomics. 2007 Jan 26;8:32. doi: 10.1186/1471-2164-8-32. BMC Genomics. 2007. PMID: 17257419 Free PMC article.
Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing.
Robertson G, Hirst M, Bainbridge M, Bilenky M, Zhao Y, Zeng T, Euskirchen G, Bernier B, Varhol R, Delaney A, Thiessen N, Griffith OL, He A, Marra M, Snyder M, Jones S. Robertson G, et al. Among authors: hirst m. Nat Methods. 2007 Aug;4(8):651-7. doi: 10.1038/nmeth1068. Epub 2007 Jun 11. Nat Methods. 2007. PMID: 17558387
LongSAGE profiling of nine human embryonic stem cell lines.
Hirst M, Delaney A, Rogers SA, Schnerch A, Persaud DR, O'Connor MD, Zeng T, Moksa M, Fichter K, Mah D, Go A, Morin RD, Baross A, Zhao Y, Khattra J, Prabhu AL, Pandoh P, McDonald H, Asano J, Dhalla N, Ma K, Lee S, Ally A, Chahal N, Menzies S, Siddiqui A, Holt R, Jones S, Gerhard DS, Thomson JA, Eaves CJ, Marra MA. Hirst M, et al. Genome Biol. 2007;8(6):R113. doi: 10.1186/gb-2007-8-6-r113. Genome Biol. 2007. PMID: 17570852 Free PMC article.
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells.
Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA. Morin RD, et al. Among authors: hirst m. Genome Res. 2008 Apr;18(4):610-21. doi: 10.1101/gr.7179508. Epub 2008 Feb 19. Genome Res. 2008. PMID: 18285502 Free PMC article.
Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing.
Morin R, Bainbridge M, Fejes A, Hirst M, Krzywinski M, Pugh T, McDonald H, Varhol R, Jones S, Marra M. Morin R, et al. Among authors: hirst m. Biotechniques. 2008 Jul;45(1):81-94. doi: 10.2144/000112900. Biotechniques. 2008. PMID: 18611170
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