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ProMEX - a mass spectral reference database for plant proteomics.
Wienkoop S, Staudinger C, Hoehenwarter W, Weckwerth W, Egelhofer V. Wienkoop S, et al. Among authors: hoehenwarter w. Front Plant Sci. 2012 Jun 6;3:125. doi: 10.3389/fpls.2012.00125. eCollection 2012. Front Plant Sci. 2012. PMID: 22685450 Free PMC article.
Functional analysis of proteins and protein species using shotgun proteomics and linear mathematics.
Hoehenwarter W, Chen Y, Recuenco-Munoz L, Wienkoop S, Weckwerth W. Hoehenwarter W, et al. Amino Acids. 2011 Jul;41(2):329-41. doi: 10.1007/s00726-010-0669-1. Epub 2010 Jul 3. Amino Acids. 2011. PMID: 20602127 Review.
Spectral counting robust on high mass accuracy mass spectrometers.
Hoehenwarter W, Wienkoop S. Hoehenwarter W, et al. Rapid Commun Mass Spectrom. 2010 Dec 30;24(24):3609-14. doi: 10.1002/rcm.4818. Rapid Commun Mass Spectrom. 2010. PMID: 21108307
MAPA distinguishes genotype-specific variability of highly similar regulatory protein isoforms in potato tuber.
Hoehenwarter W, Larhlimi A, Hummel J, Egelhofer V, Selbig J, van Dongen JT, Wienkoop S, Weckwerth W. Hoehenwarter W, et al. J Proteome Res. 2011 Jul 1;10(7):2979-91. doi: 10.1021/pr101109a. Epub 2011 May 26. J Proteome Res. 2011. PMID: 21563841
Identification of novel in vivo MAP kinase substrates in Arabidopsis thaliana through use of tandem metal oxide affinity chromatography.
Hoehenwarter W, Thomas M, Nukarinen E, Egelhofer V, Röhrig H, Weckwerth W, Conrath U, Beckers GJ. Hoehenwarter W, et al. Mol Cell Proteomics. 2013 Feb;12(2):369-80. doi: 10.1074/mcp.M112.020560. Epub 2012 Nov 20. Mol Cell Proteomics. 2013. PMID: 23172892 Free PMC article.
Using ProtMAX to create high-mass-accuracy precursor alignments from label-free quantitative mass spectrometry data generated in shotgun proteomics experiments.
Egelhofer V, Hoehenwarter W, Lyon D, Weckwerth W, Wienkoop S. Egelhofer V, et al. Among authors: hoehenwarter w. Nat Protoc. 2013 Mar;8(3):595-601. doi: 10.1038/nprot.2013.013. Epub 2013 Feb 28. Nat Protoc. 2013. PMID: 23449253
From proteomics to systems biology: MAPA, MASS WESTERN, PROMEX, and COVAIN as a user-oriented platform.
Weckwerth W, Wienkoop S, Hoehenwarter W, Egelhofer V, Sun X. Weckwerth W, et al. Among authors: hoehenwarter w. Methods Mol Biol. 2014;1072:15-27. doi: 10.1007/978-1-62703-631-3_2. Methods Mol Biol. 2014. PMID: 24136511
Identification of protein N-termini in Cyanophora paradoxa cyanelles: transit peptide composition and sequence determinants for precursor maturation.
Köhler D, Dobritzsch D, Hoehenwarter W, Helm S, Steiner JM, Baginsky S. Köhler D, et al. Among authors: hoehenwarter w. Front Plant Sci. 2015 Jul 22;6:559. doi: 10.3389/fpls.2015.00559. eCollection 2015. Front Plant Sci. 2015. PMID: 26257763 Free PMC article.
Regulation of WRKY46 Transcription Factor Function by Mitogen-Activated Protein Kinases in Arabidopsis thaliana.
Sheikh AH, Eschen-Lippold L, Pecher P, Hoehenwarter W, Sinha AK, Scheel D, Lee J. Sheikh AH, et al. Among authors: hoehenwarter w. Front Plant Sci. 2016 Feb 4;7:61. doi: 10.3389/fpls.2016.00061. eCollection 2016. Front Plant Sci. 2016. PMID: 26870073 Free PMC article.
Stress-Related Mitogen-Activated Protein Kinases Stimulate the Accumulation of Small Molecules and Proteins in Arabidopsis thaliana Root Exudates.
Strehmel N, Hoehenwarter W, Mönchgesang S, Majovsky P, Krüger S, Scheel D, Lee J. Strehmel N, et al. Among authors: hoehenwarter w. Front Plant Sci. 2017 Jul 21;8:1292. doi: 10.3389/fpls.2017.01292. eCollection 2017. Front Plant Sci. 2017. PMID: 28785276 Free PMC article.
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