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Ancient DNA.
Hofreiter M, Serre D, Poinar HN, Kuch M, Pääbo S. Hofreiter M, et al. Nat Rev Genet. 2001 May;2(5):353-9. doi: 10.1038/35072071. Nat Rev Genet. 2001. PMID: 11331901 Review.
Tracking Five Millennia of Horse Management with Extensive Ancient Genome Time Series.
Fages A, Hanghøj K, Khan N, Gaunitz C, Seguin-Orlando A, Leonardi M, McCrory Constantz C, Gamba C, Al-Rasheid KAS, Albizuri S, Alfarhan AH, Allentoft M, Alquraishi S, Anthony D, Baimukhanov N, Barrett JH, Bayarsaikhan J, Benecke N, Bernáldez-Sánchez E, Berrocal-Rangel L, Biglari F, Boessenkool S, Boldgiv B, Brem G, Brown D, Burger J, Crubézy E, Daugnora L, Davoudi H, de Barros Damgaard P, de Los Ángeles de Chorro Y de Villa-Ceballos M, Deschler-Erb S, Detry C, Dill N, do Mar Oom M, Dohr A, Ellingvåg S, Erdenebaatar D, Fathi H, Felkel S, Fernández-Rodríguez C, García-Viñas E, Germonpré M, Granado JD, Hallsson JH, Hemmer H, Hofreiter M, Kasparov A, Khasanov M, Khazaeli R, Kosintsev P, Kristiansen K, Kubatbek T, Kuderna L, Kuznetsov P, Laleh H, Leonard JA, Lhuillier J, Liesau von Lettow-Vorbeck C, Logvin A, Lõugas L, Ludwig A, Luis C, Arruda AM, Marques-Bonet T, Matoso Silva R, Merz V, Mijiddorj E, Miller BK, Monchalov O, Mohaseb FA, Morales A, Nieto-Espinet A, Nistelberger H, Onar V, Pálsdóttir AH, Pitulko V, Pitskhelauri K, Pruvost M, Rajic Sikanjic P, Rapan Papeša A, Roslyakova N, Sardari A, Sauer E, Schafberg R, Scheu A, Schibler J, Schlumbaum A, Serrand N, Serres-Armero A, Shapiro B, Sheikhi Seno S, Shevnina I, Shidrang S, Southon J, Star B, Sykes N, Taheri K, Taylor W, Teegen WR, Trbojević Vukičević T, Trixl S, Tumen D, Undrakhbold S, Usmanova E, Vahdati A, Valenzuela-Lamas S, Viegas C, Wallner B, Weinstock J, Zaibert V, Clavel B, Lepetz S, Mashkour M, Helgason A, Stefánsson K, Barrey E, Willerslev E, Outram AK, Librado P, Orlando L. Fages A, et al. Among authors: hofreiter m. Cell. 2019 May 30;177(6):1419-1435.e31. doi: 10.1016/j.cell.2019.03.049. Epub 2019 May 2. Cell. 2019. PMID: 31056281 Free PMC article.
Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.
Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PL, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas AS, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AM, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A, Mortensen C, Magnussen K, Thompson JF, Weinstock J, Gregersen K, Røed KH, Eisenmann V, Rubin CJ, Miller DC, Antczak DF, Bertelsen MF, Brunak S, Al-Rasheid KA, Ryder O, Andersson L, Mundy J, Krogh A, Gilbert MT, Kjær K, Sicheritz-Ponten T, Jensen LJ, Olsen JV, Hofreiter M, Nielsen R, Shapiro B, Wang J, Willerslev E. Orlando L, et al. Among authors: hofreiter m. Nature. 2013 Jul 4;499(7456):74-8. doi: 10.1038/nature12323. Epub 2013 Jun 26. Nature. 2013. PMID: 23803765
Ancient DNA extracted from Danish aurochs (Bos primigenius): genetic diversity and preservation.
Gravlund P, Aaris-Sørensen K, Hofreiter M, Meyer M, Bollback JP, Noe-Nygaard N. Gravlund P, et al. Among authors: hofreiter m. Ann Anat. 2012 Jan 20;194(1):103-11. doi: 10.1016/j.aanat.2011.10.011. Epub 2011 Nov 17. Ann Anat. 2012. PMID: 22188739
Ancient DNA from marine mammals: studying long-lived species over ecological and evolutionary timescales.
Foote AD, Hofreiter M, Morin PA. Foote AD, et al. Among authors: hofreiter m. Ann Anat. 2012 Jan 20;194(1):112-20. doi: 10.1016/j.aanat.2011.04.010. Epub 2011 May 13. Ann Anat. 2012. PMID: 21652193 Review.
Targeted resequencing of coding DNA sequences for SNP discovery in nonmodel species.
Förster DW, Bull JK, Lenz D, Autenrieth M, Paijmans JLA, Kraus RHS, Nowak C, Bayerl H, Kuehn R, Saveljev AP, Sindičić M, Hofreiter M, Schmidt K, Fickel J. Förster DW, et al. Among authors: hofreiter m. Mol Ecol Resour. 2018 Nov;18(6):1356-1373. doi: 10.1111/1755-0998.12924. Epub 2018 Jul 30. Mol Ecol Resour. 2018. PMID: 29978939
Ancient Ethiopian genome reveals extensive Eurasian admixture throughout the African continent.
Gallego Llorente M, Jones ER, Eriksson A, Siska V, Arthur KW, Arthur JW, Curtis MC, Stock JT, Coltorti M, Pieruccini P, Stretton S, Brock F, Higham T, Park Y, Hofreiter M, Bradley DG, Bhak J, Pinhasi R, Manica A. Gallego Llorente M, et al. Among authors: hofreiter m. Science. 2015 Nov 13;350(6262):820-2. doi: 10.1126/science.aad2879. Epub 2015 Oct 8. Science. 2015. PMID: 26449472
Spatiotemporal Dynamics of Genetic Variation in the Iberian Lynx along Its Path to Extinction Reconstructed with Ancient DNA.
Casas-Marce M, Marmesat E, Soriano L, Martínez-Cruz B, Lucena-Perez M, Nocete F, Rodríguez-Hidalgo A, Canals A, Nadal J, Detry C, Bernáldez-Sánchez E, Fernández-Rodríguez C, Pérez-Ripoll M, Stiller M, Hofreiter M, Rodríguez A, Revilla E, Delibes M, Godoy JA. Casas-Marce M, et al. Among authors: hofreiter m. Mol Biol Evol. 2017 Nov 1;34(11):2893-2907. doi: 10.1093/molbev/msx222. Mol Biol Evol. 2017. PMID: 28962023 Free PMC article.
Drafting human ancestry: what does the Neanderthal genome tell us about hominid evolution? Commentary on Green et al. (2010).
Hofreiter M. Hofreiter M. Hum Biol. 2011 Feb;83(1):1-11. doi: 10.3378/027.083.0101. Hum Biol. 2011. PMID: 21453001
Molecular phylogeny, biogeography, and habitat preference evolution of marsupials.
Mitchell KJ, Pratt RC, Watson LN, Gibb GC, Llamas B, Kasper M, Edson J, Hopwood B, Male D, Armstrong KN, Meyer M, Hofreiter M, Austin J, Donnellan SC, Lee MS, Phillips MJ, Cooper A. Mitchell KJ, et al. Among authors: hofreiter m. Mol Biol Evol. 2014 Sep;31(9):2322-30. doi: 10.1093/molbev/msu176. Epub 2014 May 30. Mol Biol Evol. 2014. PMID: 24881050
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