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Analysis and synthesis of high-amplitude Cis-elements in the mammalian circadian clock.
Kumaki Y, Ukai-Tadenuma M, Uno KD, Nishio J, Masumoto KH, Nagano M, Komori T, Shigeyoshi Y, Hogenesch JB, Ueda HR. Kumaki Y, et al. Among authors: hogenesch jb. Proc Natl Acad Sci U S A. 2008 Sep 30;105(39):14946-51. doi: 10.1073/pnas.0802636105. Epub 2008 Sep 24. Proc Natl Acad Sci U S A. 2008. PMID: 18815372 Free PMC article.
Universality and flexibility in gene expression from bacteria to human.
Ueda HR, Hayashi S, Matsuyama S, Yomo T, Hashimoto S, Kay SA, Hogenesch JB, Iino M. Ueda HR, et al. Among authors: hogenesch jb. Proc Natl Acad Sci U S A. 2004 Mar 16;101(11):3765-9. doi: 10.1073/pnas.0306244101. Epub 2004 Mar 3. Proc Natl Acad Sci U S A. 2004. PMID: 14999098 Free PMC article.
Feedback repression is required for mammalian circadian clock function.
Sato TK, Yamada RG, Ukai H, Baggs JE, Miraglia LJ, Kobayashi TJ, Welsh DK, Kay SA, Ueda HR, Hogenesch JB. Sato TK, et al. Among authors: hogenesch jb. Nat Genet. 2006 Mar;38(3):312-9. doi: 10.1038/ng1745. Epub 2006 Feb 12. Nat Genet. 2006. PMID: 16474406 Free PMC article.
Circadian and CLOCK-controlled regulation of the mouse transcriptome and cell proliferation.
Miller BH, McDearmon EL, Panda S, Hayes KR, Zhang J, Andrews JL, Antoch MP, Walker JR, Esser KA, Hogenesch JB, Takahashi JS. Miller BH, et al. Among authors: hogenesch jb. Proc Natl Acad Sci U S A. 2007 Feb 27;104(9):3342-7. doi: 10.1073/pnas.0611724104. Epub 2007 Feb 20. Proc Natl Acad Sci U S A. 2007. PMID: 17360649 Free PMC article.
CLOCK and BMAL1 regulate MyoD and are necessary for maintenance of skeletal muscle phenotype and function.
Andrews JL, Zhang X, McCarthy JJ, McDearmon EL, Hornberger TA, Russell B, Campbell KS, Arbogast S, Reid MB, Walker JR, Hogenesch JB, Takahashi JS, Esser KA. Andrews JL, et al. Among authors: hogenesch jb. Proc Natl Acad Sci U S A. 2010 Nov 2;107(44):19090-5. doi: 10.1073/pnas.1014523107. Epub 2010 Oct 18. Proc Natl Acad Sci U S A. 2010. PMID: 20956306 Free PMC article.
Role for LSM genes in the regulation of circadian rhythms.
Perez-Santángelo S, Mancini E, Francey LJ, Schlaen RG, Chernomoretz A, Hogenesch JB, Yanovsky MJ. Perez-Santángelo S, et al. Among authors: hogenesch jb. Proc Natl Acad Sci U S A. 2014 Oct 21;111(42):15166-71. doi: 10.1073/pnas.1409791111. Epub 2014 Oct 6. Proc Natl Acad Sci U S A. 2014. PMID: 25288739 Free PMC article.
Guidelines for Genome-Scale Analysis of Biological Rhythms.
Hughes ME, Abruzzi KC, Allada R, Anafi R, Arpat AB, Asher G, Baldi P, de Bekker C, Bell-Pedersen D, Blau J, Brown S, Ceriani MF, Chen Z, Chiu JC, Cox J, Crowell AM, DeBruyne JP, Dijk DJ, DiTacchio L, Doyle FJ, Duffield GE, Dunlap JC, Eckel-Mahan K, Esser KA, FitzGerald GA, Forger DB, Francey LJ, Fu YH, Gachon F, Gatfield D, de Goede P, Golden SS, Green C, Harer J, Harmer S, Haspel J, Hastings MH, Herzel H, Herzog ED, Hoffmann C, Hong C, Hughey JJ, Hurley JM, de la Iglesia HO, Johnson C, Kay SA, Koike N, Kornacker K, Kramer A, Lamia K, Leise T, Lewis SA, Li J, Li X, Liu AC, Loros JJ, Martino TA, Menet JS, Merrow M, Millar AJ, Mockler T, Naef F, Nagoshi E, Nitabach MN, Olmedo M, Nusinow DA, Ptáček LJ, Rand D, Reddy AB, Robles MS, Roenneberg T, Rosbash M, Ruben MD, Rund SSC, Sancar A, Sassone-Corsi P, Sehgal A, Sherrill-Mix S, Skene DJ, Storch KF, Takahashi JS, Ueda HR, Wang H, Weitz C, Westermark PO, Wijnen H, Xu Y, Wu G, Yoo SH, Young M, Zhang EE, Zielinski T, Hogenesch JB. Hughes ME, et al. Among authors: hogenesch jb. J Biol Rhythms. 2017 Oct;32(5):380-393. doi: 10.1177/0748730417728663. Epub 2017 Nov 3. J Biol Rhythms. 2017. PMID: 29098954 Free PMC article.
Computational and experimental insights into the circadian effects of SIRT1.
Foteinou PT, Venkataraman A, Francey LJ, Anafi RC, Hogenesch JB, Doyle FJ 3rd. Foteinou PT, et al. Among authors: hogenesch jb. Proc Natl Acad Sci U S A. 2018 Nov 6;115(45):11643-11648. doi: 10.1073/pnas.1803410115. Epub 2018 Oct 22. Proc Natl Acad Sci U S A. 2018. PMID: 30348778 Free PMC article.
178 results