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DAOSTORM: an algorithm for high- density super-resolution microscopy.
Holden SJ, Uphoff S, Kapanidis AN. Holden SJ, et al. Nat Methods. 2011 Apr;8(4):279-80. doi: 10.1038/nmeth0411-279. Nat Methods. 2011. PMID: 21451515 No abstract available.
Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software.
Sage D, Pham TA, Babcock H, Lukes T, Pengo T, Chao J, Velmurugan R, Herbert A, Agrawal A, Colabrese S, Wheeler A, Archetti A, Rieger B, Ober R, Hagen GM, Sibarita JB, Ries J, Henriques R, Unser M, Holden S. Sage D, et al. Nat Methods. 2019 May;16(5):387-395. doi: 10.1038/s41592-019-0364-4. Epub 2019 Apr 8. Nat Methods. 2019. PMID: 30962624 Free PMC article.
Publisher Correction: Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software.
Sage D, Pham TA, Babcock H, Lukes T, Pengo T, Chao J, Velmurugan R, Herbert A, Agrawal A, Colabrese S, Wheeler A, Archetti A, Rieger B, Ober R, Hagen GM, Sibarita JB, Ries J, Henriques R, Unser M, Holden S. Sage D, et al. Nat Methods. 2019 Jun;16(6):561. doi: 10.1038/s41592-019-0453-4. Nat Methods. 2019. PMID: 31097821
Monitoring multiple distances within a single molecule using switchable FRET.
Uphoff S, Holden SJ, Le Reste L, Periz J, van de Linde S, Heilemann M, Kapanidis AN. Uphoff S, et al. Among authors: holden sj. Nat Methods. 2010 Oct;7(10):831-6. doi: 10.1038/nmeth.1502. Epub 2010 Sep 5. Nat Methods. 2010. PMID: 20818380
FALCON: fast and unbiased reconstruction of high-density super-resolution microscopy data.
Min J, Vonesch C, Kirshner H, Carlini L, Olivier N, Holden S, Manley S, Ye JC, Unser M. Min J, et al. Sci Rep. 2014 Apr 3;4:4577. doi: 10.1038/srep04577. Sci Rep. 2014. PMID: 24694686 Free PMC article.
Identifying molecular dynamics in single-molecule FRET experiments with burst variance analysis.
Torella JP, Holden SJ, Santoso Y, Hohlbein J, Kapanidis AN. Torella JP, et al. Among authors: holden sj. Biophys J. 2011 Mar 16;100(6):1568-77. doi: 10.1016/j.bpj.2011.01.066. Biophys J. 2011. PMID: 21402040 Free PMC article.
Correction of a Depth-Dependent Lateral Distortion in 3D Super-Resolution Imaging.
Carlini L, Holden SJ, Douglass KM, Manley S. Carlini L, et al. Among authors: holden sj. PLoS One. 2015 Nov 23;10(11):e0142949. doi: 10.1371/journal.pone.0142949. eCollection 2015. PLoS One. 2015. PMID: 26600467 Free PMC article.
High throughput 3D super-resolution microscopy reveals Caulobacter crescentus in vivo Z-ring organization.
Holden SJ, Pengo T, Meibom KL, Fernandez Fernandez C, Collier J, Manley S. Holden SJ, et al. Proc Natl Acad Sci U S A. 2014 Mar 25;111(12):4566-71. doi: 10.1073/pnas.1313368111. Epub 2014 Mar 10. Proc Natl Acad Sci U S A. 2014. PMID: 24616530 Free PMC article.
Movement dynamics of divisome proteins and PBP2x:FtsW in cells of Streptococcus pneumoniae.
Perez AJ, Cesbron Y, Shaw SL, Bazan Villicana J, Tsui HT, Boersma MJ, Ye ZA, Tovpeko Y, Dekker C, Holden S, Winkler ME. Perez AJ, et al. Proc Natl Acad Sci U S A. 2019 Feb 19;116(8):3211-3220. doi: 10.1073/pnas.1816018116. Epub 2019 Feb 4. Proc Natl Acad Sci U S A. 2019. PMID: 30718427 Free PMC article.
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