Holding AN - Search Results

1

Parallel factor ChIP provides essential internal control for quantitative differential ChIP-seq.

Guertin MJ, Cullen AE, Markowetz F, Holding AN. Guertin MJ, et al. Among authors: holding an. Nucleic Acids Res. 2018 Jul 6;46(12):e75. doi: 10.1093/nar/gky252. Nucleic Acids Res. 2018. PMID: 29672735 Free PMC article.

2

A quantitative mass spectrometry-based approach to monitor the dynamics of endogenous chromatin-associated protein complexes.

Papachristou EK, Kishore K, Holding AN, Harvey K, Roumeliotis TI, Chilamakuri CSR, Omarjee S, Chia KM, Swarbrick A, Lim E, Markowetz F, Eldridge M, Siersbaek R, D'Santos CS, Carroll JS. Papachristou EK, et al. Among authors: holding an. Nat Commun. 2018 Jun 13;9(1):2311. doi: 10.1038/s41467-018-04619-5. Nat Commun. 2018. PMID: 29899353 Free PMC article.

3

Genome-wide Estrogen Receptor-α activation is sustained, not cyclical.

Holding AN, Cullen AE, Markowetz F. Holding AN, et al. Elife. 2018 Nov 20;7:e40854. doi: 10.7554/eLife.40854. Elife. 2018. PMID: 30457555 Free PMC article.

4

VULCAN integrates ChIP-seq with patient-derived co-expression networks to identify GRHL2 as a key co-regulator of ERa at enhancers in breast cancer.

Holding AN, Giorgi FM, Donnelly A, Cullen AE, Nagarajan S, Selth LA, Markowetz F. Holding AN, et al. Genome Biol. 2019 May 13;20(1):91. doi: 10.1186/s13059-019-1698-z. Genome Biol. 2019. PMID: 31084623 Free PMC article.

5

Correction to: VULCAN integrates ChIP-seq with patient-derived co-expression networks to identify GRHL2 as a key co-regulator of ERa at enhancers in breast cancer.

Holding AN, Giorgi FM, Donnelly A, Cullen AE, Nagarajan S, Selth LA, Markowetz F. Holding AN, et al. Genome Biol. 2019 Jun 14;20(1):122. doi: 10.1186/s13059-019-1733-0. Genome Biol. 2019. PMID: 31200751 Free PMC article.

6

Data generation and network reconstruction strategies for single cell transcriptomic profiles of CRISPR-mediated gene perturbations.

Holding AN, Cook HV, Markowetz F. Holding AN, et al. Biochim Biophys Acta Gene Regul Mech. 2020 Jun;1863(6):194441. doi: 10.1016/j.bbagrm.2019.194441. Epub 2019 Nov 20. Biochim Biophys Acta Gene Regul Mech. 2020. PMID: 31756390 Review.

7

Intestinal region-specific Wnt signalling profiles reveal interrelation between cell identity and oncogenic pathway activity in cancer development.

Adam RS, van Neerven SM, Pleguezuelos-Manzano C, Simmini S, Léveillé N, de Groot NE, Holding AN, Markowetz F, Vermeulen L. Adam RS, et al. Among authors: holding an. Cancer Cell Int. 2020 Dec 3;20(1):578. doi: 10.1186/s12935-020-01661-6. Cancer Cell Int. 2020. PMID: 33292279 Free PMC article.

8

Bicaudal-D uses a parallel, homodimeric coiled coil with heterotypic registry to coordinate recruitment of cargos to dynein.

Liu Y, Salter HK, Holding AN, Johnson CM, Stephens E, Lukavsky PJ, Walshaw J, Bullock SL. Liu Y, et al. Among authors: holding an. Genes Dev. 2013 Jun 1;27(11):1233-46. doi: 10.1101/gad.212381.112. Epub 2013 May 30. Genes Dev. 2013. PMID: 23723415 Free PMC article.

9

XL-MS: Protein cross-linking coupled with mass spectrometry.

Holding AN. Holding AN. Methods. 2015 Nov 1;89:54-63. doi: 10.1016/j.ymeth.2015.06.010. Epub 2015 Jun 12. Methods. 2015. PMID: 26079926 Review.

10

Hekate: software suite for the mass spectrometric analysis and three-dimensional visualization of cross-linked protein samples.

Holding AN, Lamers MH, Stephens E, Skehel JM. Holding AN, et al. J Proteome Res. 2013 Dec 6;12(12):5923-33. doi: 10.1021/pr4003867. Epub 2013 Oct 4. J Proteome Res. 2013. PMID: 24010795 Free PMC article.

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