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Evolutionary history and phylogeography of human viruses.
Holmes EC. Holmes EC. Annu Rev Microbiol. 2008;62:307-28. doi: 10.1146/annurev.micro.62.081307.162912. Annu Rev Microbiol. 2008. PMID: 18785840 Review.
Revealing the history of infectious disease epidemics through phylogenetic trees.
Holmes EC, Nee S, Rambaut A, Garnett GP, Harvey PH. Holmes EC, et al. Philos Trans R Soc Lond B Biol Sci. 1995 Jul 29;349(1327):33-40. doi: 10.1098/rstb.1995.0088. Philos Trans R Soc Lond B Biol Sci. 1995. PMID: 8748017
Reconstructing the complex evolutionary history of hepatitis B virus.
Bollyky PL, Holmes EC. Bollyky PL, et al. J Mol Evol. 1999 Jul;49(1):130-41. doi: 10.1007/pl00006526. J Mol Evol. 1999. PMID: 10368441
Evolutionary aspects of recombination in RNA viruses.
Worobey M, Holmes EC. Worobey M, et al. J Gen Virol. 1999 Oct;80 ( Pt 10):2535-2543. doi: 10.1099/0022-1317-80-10-2535. J Gen Virol. 1999. PMID: 10573145 Review. No abstract available.
The causes and consequences of genetic variation in dengue virus.
Holmes EC, Burch SS. Holmes EC, et al. Trends Microbiol. 2000 Feb;8(2):74-7. doi: 10.1016/s0966-842x(99)01669-8. Trends Microbiol. 2000. PMID: 10664600 Review.
Genetic diversity of Borrelia burgdorferi sensu lato in ticks from mainland Portugal.
De Michelis S, Sewell HS, Collares-Pereira M, Santos-Reis M, Schouls LM, Benes V, Holmes EC, Kurtenbach K. De Michelis S, et al. J Clin Microbiol. 2000 Jun;38(6):2128-33. J Clin Microbiol. 2000. PMID: 10834965 Free PMC article.
A revised evolutionary history of hepatitis B virus (HBV).
Fares MA, Holmes EC. Fares MA, et al. J Mol Evol. 2002 Jun;54(6):807-14. doi: 10.1007/s00239-001-0084-z. J Mol Evol. 2002. PMID: 12029362
Recombination in evolutionary genomics.
Posada D, Crandall KA, Holmes EC. Posada D, et al. Annu Rev Genet. 2002;36:75-97. doi: 10.1146/annurev.genet.36.040202.111115. Epub 2002 Jun 11. Annu Rev Genet. 2002. PMID: 12429687 Review.
The origin, emergence and evolutionary genetics of dengue virus.
Holmes EC, Twiddy SS. Holmes EC, et al. Infect Genet Evol. 2003 May;3(1):19-28. doi: 10.1016/s1567-1348(03)00004-2. Infect Genet Evol. 2003. PMID: 12797969 Review.
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