Skip to main page content
Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

My NCBI Filters
Text availability
Article attribute
Article type
Publication date

Search Results

1,414 results
Filters applied: . Clear all Results are displayed in a computed author sort order. Results by year timeline is unavailable
Page 1
Waste not, want not: why rarefying microbiome data is inadmissible.
McMurdie PJ, Holmes S. McMurdie PJ, et al. PLoS Comput Biol. 2014 Apr 3;10(4):e1003531. doi: 10.1371/journal.pcbi.1003531. eCollection 2014 Apr. PLoS Comput Biol. 2014. PMID: 24699258 Free PMC article.
HIV-1 subtype B protease and reverse transcriptase amino acid covariation.
Rhee SY, Liu TF, Holmes SP, Shafer RW. Rhee SY, et al. PLoS Comput Biol. 2007 May;3(5):e87. doi: 10.1371/journal.pcbi.0030087. PLoS Comput Biol. 2007. PMID: 17500586 Free PMC article.
Detection of cytomegalovirus drug resistance mutations by next-generation sequencing.
Sahoo MK, Lefterova MI, Yamamoto F, Waggoner JJ, Chou S, Holmes SP, Anderson MW, Pinsky BA. Sahoo MK, et al. J Clin Microbiol. 2013 Nov;51(11):3700-10. doi: 10.1128/JCM.01605-13. Epub 2013 Aug 28. J Clin Microbiol. 2013. PMID: 23985916 Free PMC article.
Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota.
Kashyap PC, Marcobal A, Ursell LK, Smits SA, Sonnenburg ED, Costello EK, Higginbottom SK, Domino SE, Holmes SP, Relman DA, Knight R, Gordon JI, Sonnenburg JL. Kashyap PC, et al. Proc Natl Acad Sci U S A. 2013 Oct 15;110(42):17059-64. doi: 10.1073/pnas.1306070110. Epub 2013 Sep 23. Proc Natl Acad Sci U S A. 2013. PMID: 24062455 Free PMC article.
Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking.
McMurdie PJ, Holmes S. McMurdie PJ, et al. Bioinformatics. 2015 Jan 15;31(2):282-3. doi: 10.1093/bioinformatics/btu616. Epub 2014 Sep 26. Bioinformatics. 2015. PMID: 25262154 Free PMC article.
Along with a data- and context-aware dynamic interface for exploring the effects of parameter and method choices, Shiny-phyloseq also records the complete user input and subsequent graphical results of a user's session, allowing the user to archive, share and reproduce the …
Along with a data- and context-aware dynamic interface for exploring the effects of parameter and method choices, Shiny-phyloseq also record …
Temporal and spatial variation of the human microbiota during pregnancy.
DiGiulio DB, Callahan BJ, McMurdie PJ, Costello EK, Lyell DJ, Robaczewska A, Sun CL, Goltsman DS, Wong RJ, Shaw G, Stevenson DK, Holmes SP, Relman DA. DiGiulio DB, et al. Proc Natl Acad Sci U S A. 2015 Sep 1;112(35):11060-5. doi: 10.1073/pnas.1502875112. Epub 2015 Aug 17. Proc Natl Acad Sci U S A. 2015. PMID: 26283357 Free PMC article.
1,414 results
Jump to page
Feedback