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An Interactive Java Statistical Image Segmentation System: GemIdent.
Holmes S, Kapelner A, Lee PP. Holmes S, et al. J Stat Softw. 2009 Jun 1;30(10):i10. J Stat Softw. 2009. PMID: 21614138 Free PMC article.
Multivariate Heteroscedasticity Models for Functional Brain Connectivity.
Seiler C, Holmes S. Seiler C, et al. Front Neurosci. 2017 Dec 12;11:696. doi: 10.3389/fnins.2017.00696. eCollection 2017. Front Neurosci. 2017. PMID: 29311777 Free PMC article.
Bayesian Nonparametric Ordination for the Analysis of Microbial Communities.
Ren B, Bacallado S, Favaro S, Holmes S, Trippa L. Ren B, et al. J Am Stat Assoc. 2017;112(520):1430-1442. doi: 10.1080/01621459.2017.1288631. Epub 2017 Feb 28. J Am Stat Assoc. 2017. PMID: 29430070 Free PMC article.
It remains important to evaluate how uncertainty in estimates of each biological sample's microbial distribution propagates to ordination analyses, including visualization of clusters and projections of biological samples on low dimensional spaces. ...
It remains important to evaluate how uncertainty in estimates of each biological sample's microbial distribution propagates to ordina …
Interactive Visualization of Hierarchically Structured Data.
Sankaran K, Holmes S. Sankaran K, et al. J Comput Graph Stat. 2018;27(3):553-563. doi: 10.1080/10618600.2017.1392866. Epub 2017 Oct 18. J Comput Graph Stat. 2018. PMID: 30416327 Free PMC article.
THE DUALITY DIAGRAM IN DATA ANALYSIS: EXAMPLES OF MODERN APPLICATIONS.
De la Cruz O, Holmes S. De la Cruz O, et al. Ann Appl Stat. 2011 Dec;5(4):2266-2277. doi: 10.1214/10-aoas408. Ann Appl Stat. 2011. PMID: 22282721 Free PMC article.
Today's data-heavy research environment requires the integration of different sources of information into structured datasets that can not be analyzed as simple matrices. ...
Today's data-heavy research environment requires the integration of different sources of information into structured datasets that ca …
Waste not, want not: why rarefying microbiome data is inadmissible.
McMurdie PJ, Holmes S. McMurdie PJ, et al. PLoS Comput Biol. 2014 Apr 3;10(4):e1003531. doi: 10.1371/journal.pcbi.1003531. eCollection 2014 Apr. PLoS Comput Biol. 2014. PMID: 24699258 Free PMC article.
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