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285 results
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Calculation of pKas in RNA: on the structural origins and functional roles of protonated nucleotides.
Tang CL, Alexov E, Pyle AM, Honig B. Tang CL, et al. Among authors: honig b. J Mol Biol. 2007 Mar 9;366(5):1475-96. doi: 10.1016/j.jmb.2006.12.001. Epub 2006 Dec 6. J Mol Biol. 2007. PMID: 17223134
On the environment of ionizable groups in globular proteins.
Rashin AA, Honig B. Rashin AA, et al. Among authors: honig b. J Mol Biol. 1984 Mar 15;173(4):515-21. doi: 10.1016/0022-2836(84)90394-2. J Mol Biol. 1984. PMID: 6708109
Electrostatics and the membrane association of Src: theory and experiment.
Murray D, Hermida-Matsumoto L, Buser CA, Tsang J, Sigal CT, Ben-Tal N, Honig B, Resh MD, McLaughlin S. Murray D, et al. Among authors: honig b. Biochemistry. 1998 Feb 24;37(8):2145-59. doi: 10.1021/bi972012b. Biochemistry. 1998. PMID: 9485361
On the calculation of electrostatic interactions in proteins.
Gilson MK, Rashin A, Fine R, Honig B. Gilson MK, et al. Among authors: honig b. J Mol Biol. 1985 Aug 5;184(3):503-16. doi: 10.1016/0022-2836(85)90297-9. J Mol Biol. 1985. PMID: 4046024
Free energy determinants of secondary structure formation: II. Antiparallel beta-sheets.
Yang AS, Honig B. Yang AS, et al. Among authors: honig b. J Mol Biol. 1995 Sep 22;252(3):366-76. doi: 10.1006/jmbi.1995.0503. J Mol Biol. 1995. PMID: 7563057
VISTAL--a new 2D visualization tool of protein 3D structural alignments.
Kolodny R, Honig B. Kolodny R, et al. Among authors: honig b. Bioinformatics. 2006 Sep 1;22(17):2166-7. doi: 10.1093/bioinformatics/btl353. Epub 2006 Jul 12. Bioinformatics. 2006. PMID: 16837525
Structural bioinformatics of the interactome.
Petrey D, Honig B. Petrey D, et al. Among authors: honig b. Annu Rev Biophys. 2014;43:193-210. doi: 10.1146/annurev-biophys-051013-022726. Annu Rev Biophys. 2014. PMID: 24895853 Free PMC article. Review.
OnTheFly: a database of Drosophila melanogaster transcription factors and their binding sites.
Shazman S, Lee H, Socol Y, Mann RS, Honig B. Shazman S, et al. Among authors: honig b. Nucleic Acids Res. 2014 Jan;42(Database issue):D167-71. doi: 10.1093/nar/gkt1165. Epub 2013 Nov 22. Nucleic Acids Res. 2014. PMID: 24271386 Free PMC article.
Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins.
Slattery M, Riley T, Liu P, Abe N, Gomez-Alcala P, Dror I, Zhou T, Rohs R, Honig B, Bussemaker HJ, Mann RS. Slattery M, et al. Among authors: honig b. Cell. 2011 Dec 9;147(6):1270-82. doi: 10.1016/j.cell.2011.10.053. Cell. 2011. PMID: 22153072 Free PMC article.
Origins of specificity in protein-DNA recognition.
Rohs R, Jin X, West SM, Joshi R, Honig B, Mann RS. Rohs R, et al. Among authors: honig b. Annu Rev Biochem. 2010;79:233-69. doi: 10.1146/annurev-biochem-060408-091030. Annu Rev Biochem. 2010. PMID: 20334529 Free PMC article. Review.
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