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Genome sequencing and analysis of Aspergillus oryzae.
Machida M, Asai K, Sano M, Tanaka T, Kumagai T, Terai G, Kusumoto K, Arima T, Akita O, Kashiwagi Y, Abe K, Gomi K, Horiuchi H, Kitamoto K, Kobayashi T, Takeuchi M, Denning DW, Galagan JE, Nierman WC, Yu J, Archer DB, Bennett JW, Bhatnagar D, Cleveland TE, Fedorova ND, Gotoh O, Horikawa H, Hosoyama A, Ichinomiya M, Igarashi R, Iwashita K, Juvvadi PR, Kato M, Kato Y, Kin T, Kokubun A, Maeda H, Maeyama N, Maruyama J, Nagasaki H, Nakajima T, Oda K, Okada K, Paulsen I, Sakamoto K, Sawano T, Takahashi M, Takase K, Terabayashi Y, Wortman JR, Yamada O, Yamagata Y, Anazawa H, Hata Y, Koide Y, Komori T, Koyama Y, Minetoki T, Suharnan S, Tanaka A, Isono K, Kuhara S, Ogasawara N, Kikuchi H. Machida M, et al. Nature. 2005 Dec 22;438(7071):1157-61. doi: 10.1038/nature04300. Nature. 2005. PMID: 16372010
Genome sequence of Aspergillus luchuensis NBRC 4314.
Yamada O, Machida M, Hosoyama A, Goto M, Takahashi T, Futagami T, Yamagata Y, Takeuchi M, Kobayashi T, Koike H, Abe K, Asai K, Arita M, Fujita N, Fukuda K, Higa KI, Horikawa H, Ishikawa T, Jinno K, Kato Y, Kirimura K, Mizutani O, Nakasone K, Sano M, Shiraishi Y, Tsukahara M, Gomi K. Yamada O, et al. DNA Res. 2016 Dec;23(6):507-515. doi: 10.1093/dnares/dsw032. Epub 2016 Sep 20. DNA Res. 2016. PMID: 27651094 Free PMC article.
Whole-genome sequencing of sake yeast Saccharomyces cerevisiae Kyokai no. 7.
Akao T, Yashiro I, Hosoyama A, Kitagaki H, Horikawa H, Watanabe D, Akada R, Ando Y, Harashima S, Inoue T, Inoue Y, Kajiwara S, Kitamoto K, Kitamoto N, Kobayashi O, Kuhara S, Masubuchi T, Mizoguchi H, Nakao Y, Nakazato A, Namise M, Oba T, Ogata T, Ohta A, Sato M, Shibasaki S, Takatsume Y, Tanimoto S, Tsuboi H, Nishimura A, Yoda K, Ishikawa T, Iwashita K, Fujita N, Shimoi H. Akao T, et al. DNA Res. 2011 Dec;18(6):423-34. doi: 10.1093/dnares/dsr029. Epub 2011 Sep 6. DNA Res. 2011. PMID: 21900213 Free PMC article.
Deciphering the genome of polyphosphate accumulating actinobacterium Microlunatus phosphovorus.
Kawakoshi A, Nakazawa H, Fukada J, Sasagawa M, Katano Y, Nakamura S, Hosoyama A, Sasaki H, Ichikawa N, Hanada S, Kamagata Y, Nakamura K, Yamazaki S, Fujita N. Kawakoshi A, et al. DNA Res. 2012 Oct;19(5):383-94. doi: 10.1093/dnares/dss020. Epub 2012 Aug 23. DNA Res. 2012. PMID: 22923697 Free PMC article.
Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3.
Kawarabayasi Y, Sawada M, Horikawa H, Haikawa Y, Hino Y, Yamamoto S, Sekine M, Baba S, Kosugi H, Hosoyama A, Nagai Y, Sakai M, Ogura K, Otsuka R, Nakazawa H, Takamiya M, Ohfuku Y, Funahashi T, Tanaka T, Kudoh Y, Yamazaki J, Kushida N, Oguchi A, Aoki K, Kikuchi H. Kawarabayasi Y, et al. DNA Res. 1998 Apr 30;5(2):55-76. doi: 10.1093/dnares/5.2.55. DNA Res. 1998. PMID: 9679194
A genome sequence-based approach to taxonomy of the genus Nocardia.
Tamura T, Matsuzawa T, Oji S, Ichikawa N, Hosoyama A, Katsumata H, Yamazoe A, Hamada M, Suzuki K, Gonoi T, Fujita N. Tamura T, et al. Antonie Van Leeuwenhoek. 2012 Oct;102(3):481-91. doi: 10.1007/s10482-012-9780-5. Epub 2012 Jul 27. Antonie Van Leeuwenhoek. 2012. PMID: 22836677
Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3 (supplement).
Kawarabayasi Y, Sawada M, Horikawa H, Haikawa Y, Hino Y, Yamamoto S, Sekine M, Baba S, Kosugi H, Hosoyama A, Nagai Y, Sakai M, Ogura K, Otsuka R, Nakazawa H, Takamiya M, Ohfuku Y, Funahashi T, Tanaka T, Kudoh Y, Yamazaki J, Kushida N, Oguchi A, Aoki K, Kikuchi H. Kawarabayasi Y, et al. DNA Res. 1998 Apr 30;5(2):147-55. doi: 10.1093/dnares/5.2.147. DNA Res. 1998. PMID: 9679203 No abstract available.
Draft Genome Sequence of the Polychlorinated Biphenyl-Degrading Bacterium Cupriavidus basilensis KF708 (NBRC 110671) Isolated from Biphenyl-Contaminated Soil.
Suenaga H, Yamazoe A, Hosoyama A, Kimura N, Hirose J, Watanabe T, Fujihara H, Futagami T, Goto M, Furukawa K. Suenaga H, et al. Genome Announc. 2015 Mar 19;3(2):e00143-15. doi: 10.1128/genomeA.00143-15. Genome Announc. 2015. PMID: 25792061 Free PMC article.
Reclassification of Nocardia species based on whole genome sequence and associated phenotypic data.
Tamura T, Ohji S, Ichikawa N, Hosoyama A, Yamazoe A, Hamada M, Komaki H, Shibata C, Matsuzawa T, Gonoi T, Suzuki KI, Fujita N. Tamura T, et al. Among authors: Hosoyama A. J Antibiot (Tokyo). 2018 Jul;71(7):633-641. doi: 10.1038/s41429-018-0043-1. Epub 2018 Apr 4. J Antibiot (Tokyo). 2018. PMID: 29618770
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