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PSLDoc: Protein subcellular localization prediction based on gapped-dipeptides and probabilistic latent semantic analysis.
Chang JM, Su EC, Lo A, Chiu HS, Sung TY, Hsu WL. Chang JM, et al. Among authors: hsu wl. Proteins. 2008 Aug;72(2):693-710. doi: 10.1002/prot.21944. Proteins. 2008. PMID: 18260102
HYPROSP: a hybrid protein secondary structure prediction algorithm--a knowledge-based approach.
Wu KP, Lin HN, Chang JM, Sung TY, Hsu WL. Wu KP, et al. Among authors: hsu wl. Nucleic Acids Res. 2004 Sep 24;32(17):5059-65. doi: 10.1093/nar/gkh836. Print 2004. Nucleic Acids Res. 2004. PMID: 15448186 Free PMC article.
HYPROSP II--a knowledge-based hybrid method for protein secondary structure prediction based on local prediction confidence.
Lin HN, Chang JM, Wu KP, Sung TY, Hsu WL. Lin HN, et al. Among authors: hsu wl. Bioinformatics. 2005 Aug 1;21(15):3227-33. doi: 10.1093/bioinformatics/bti524. Epub 2005 Jun 2. Bioinformatics. 2005. PMID: 15932901
HYPLOSP: a knowledge-based approach to protein local structure prediction.
Chen CT, Lin HN, Sung TY, Hsu WL. Chen CT, et al. Among authors: hsu wl. J Bioinform Comput Biol. 2006 Dec;4(6):1287-307. doi: 10.1142/s0219720006002466. J Bioinform Comput Biol. 2006. PMID: 17245815
Transmembrane helix and topology prediction using hierarchical SVM classifiers and an alternating geometric scoring function.
Lo A, Chiu HS, Sung TY, Hsu WL. Lo A, et al. Among authors: hsu wl. Comput Syst Bioinformatics Conf. 2006:31-42. Comput Syst Bioinformatics Conf. 2006. PMID: 17369623
Protein subcellular localization prediction based on compartment-specific biological features.
Su CY, Lo A, Chiu HS, Sung TY, Hsu WL. Su CY, et al. Among authors: hsu wl. Comput Syst Bioinformatics Conf. 2006:325-30. Comput Syst Bioinformatics Conf. 2006. PMID: 17369650
The Multi-Q web server for multiplexed protein quantitation.
Yu CY, Tsui YH, Yian YH, Sung TY, Hsu WL. Yu CY, et al. Among authors: hsu wl. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W707-12. doi: 10.1093/nar/gkm345. Epub 2007 Jun 6. Nucleic Acids Res. 2007. PMID: 17553828 Free PMC article.
Protein subcellular localization prediction based on compartment-specific features and structure conservation.
Su EC, Chiu HS, Lo A, Hwang JK, Sung TY, Hsu WL. Su EC, et al. Among authors: hsu wl. BMC Bioinformatics. 2007 Sep 8;8:330. doi: 10.1186/1471-2105-8-330. BMC Bioinformatics. 2007. PMID: 17825110 Free PMC article.
Enhanced membrane protein topology prediction using a hierarchical classification method and a new scoring function.
Lo A, Chiu HS, Sung TY, Lyu PC, Hsu WL. Lo A, et al. Among authors: hsu wl. J Proteome Res. 2008 Feb;7(2):487-96. doi: 10.1021/pr0702058. J Proteome Res. 2008. PMID: 18081245
Protease substrate site predictors derived from machine learning on multilevel substrate phage display data.
Chen CT, Yang EW, Hsu HJ, Sun YK, Hsu WL, Yang AS. Chen CT, et al. Among authors: hsu hj, hsu wl. Bioinformatics. 2008 Dec 1;24(23):2691-7. doi: 10.1093/bioinformatics/btn538. Epub 2008 Oct 29. Bioinformatics. 2008. PMID: 18974075
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