Hu Y - Search Results

1

LongGF: computational algorithm and software tool for fast and accurate detection of gene fusions by long-read transcriptome sequencing.

Liu Q, Hu Y, Stucky A, Fang L, Zhong JF, Wang K. Liu Q, et al. Among authors: hu y. BMC Genomics. 2020 Dec 29;21(Suppl 11):793. doi: 10.1186/s12864-020-07207-4. BMC Genomics. 2020. PMID: 33372596 Free PMC article.

2

Detecting differential alternative splicing events in scRNA-seq with or without Unique Molecular Identifiers.

Hu Y, Wang K, Li M. Hu Y, et al. PLoS Comput Biol. 2020 Jun 5;16(6):e1007925. doi: 10.1371/journal.pcbi.1007925. eCollection 2020 Jun. PLoS Comput Biol. 2020. PMID: 32502143 Free PMC article.

3

Implications of Error-Prone Long-Read Whole-Genome Shotgun Sequencing on Characterizing Reference Microbiomes.

Hu Y, Fang L, Nicholson C, Wang K. Hu Y, et al. iScience. 2020 Jun 26;23(6):101223. doi: 10.1016/j.isci.2020.101223. Epub 2020 Jun 2. iScience. 2020. PMID: 32563152 Free PMC article.

4

LIQA: long-read isoform quantification and analysis.

Hu Y, Fang L, Chen X, Zhong JF, Li M, Wang K. Hu Y, et al. Genome Biol. 2021 Jun 17;22(1):182. doi: 10.1186/s13059-021-02399-8. Genome Biol. 2021. PMID: 34140043 Free PMC article.

5

OARD: Open annotations for rare diseases and their phenotypes based on real-world data.

Liu C, Ta CN, Havrilla JM, Nestor JG, Spotnitz ME, Geneslaw AS, Hu Y, Chung WK, Wang K, Weng C. Liu C, et al. Among authors: hu y. Am J Hum Genet. 2022 Sep 1;109(9):1591-1604. doi: 10.1016/j.ajhg.2022.08.002. Epub 2022 Aug 22. Am J Hum Genet. 2022. PMID: 35998640 Free PMC article.

6

DELongSeq for efficient detection of differential isoform expression from long-read RNA-seq data.

Hu Y, Gouru A, Wang K. Hu Y, et al. NAR Genom Bioinform. 2023 Mar 3;5(1):lqad019. doi: 10.1093/nargab/lqad019. eCollection 2023 Mar. NAR Genom Bioinform. 2023. PMID: 36879902 Free PMC article.

7

Expanding the phenotypic spectrum of NAA10-related neurodevelopmental syndrome and NAA15-related neurodevelopmental syndrome.

Lyon GJ, Vedaie M, Beisheim T, Park A, Marchi E, Gottlieb L, Hsieh TC, Klinkhammer H, Sandomirsky K, Cheng H, Starr LJ, Preddy I, Tseng M, Li Q, Hu Y, Wang K, Carvalho A, Martinez F, Caro-Llopis A, Gavin M, Amble K, Krawitz P, Marmorstein R, Herr-Israel E. Lyon GJ, et al. Among authors: hu y. Eur J Hum Genet. 2023 Jul;31(7):824-833. doi: 10.1038/s41431-023-01368-y. Epub 2023 May 2. Eur J Hum Genet. 2023. PMID: 37130971 Free PMC article.

8

PennSeq: accurate isoform-specific gene expression quantification in RNA-Seq by modeling non-uniform read distribution.

Hu Y, Liu Y, Mao X, Jia C, Ferguson JF, Xue C, Reilly MP, Li H, Li M. Hu Y, et al. Nucleic Acids Res. 2014 Feb;42(3):e20. doi: 10.1093/nar/gkt1304. Epub 2013 Dec 20. Nucleic Acids Res. 2014. PMID: 24362841 Free PMC article.

9

RNA-Seq identifies novel myocardial gene expression signatures of heart failure.

Liu Y, Morley M, Brandimarto J, Hannenhalli S, Hu Y, Ashley EA, Tang WH, Moravec CS, Margulies KB, Cappola TP, Li M; MAGNet consortium. Liu Y, et al. Among authors: hu y. Genomics. 2015 Feb;105(2):83-9. doi: 10.1016/j.ygeno.2014.12.002. Epub 2014 Dec 17. Genomics. 2015. PMID: 25528681 Free PMC article.

10

Accounting for technical noise in differential expression analysis of single-cell RNA sequencing data.

Jia C, Hu Y, Kelly D, Kim J, Li M, Zhang NR. Jia C, et al. Among authors: hu y. Nucleic Acids Res. 2017 Nov 2;45(19):10978-10988. doi: 10.1093/nar/gkx754. Nucleic Acids Res. 2017. PMID: 29036714 Free PMC article.

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