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Gene expression profiles in hepatitis C virus (HCV) and HIV coinfection: class prediction analyses before treatment predict the outcome of anti-HCV therapy among HIV-coinfected persons.
Lempicki RA, Polis MA, Yang J, McLaughlin M, Koratich C, Huang DW, Fullmer B, Wu L, Rehm CA, Masur H, Lane HC, Sherman KE, Fauci AS, Kottilil S. Lempicki RA, et al. Among authors: huang dw. J Infect Dis. 2006 Apr 15;193(8):1172-7. doi: 10.1086/501365. Epub 2006 Mar 13. J Infect Dis. 2006. PMID: 16544259
DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.
Huang DW, Sherman BT, Tan Q, Kir J, Liu D, Bryant D, Guo Y, Stephens R, Baseler MW, Lane HC, Lempicki RA. Huang DW, et al. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W169-75. doi: 10.1093/nar/gkm415. Epub 2007 Jun 18. Nucleic Acids Res. 2007. PMID: 17576678 Free PMC article.
The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists.
Huang DW, Sherman BT, Tan Q, Collins JR, Alvord WG, Roayaei J, Stephens R, Baseler MW, Lane HC, Lempicki RA. Huang DW, et al. Genome Biol. 2007;8(9):R183. doi: 10.1186/gb-2007-8-9-r183. Genome Biol. 2007. PMID: 17784955 Free PMC article.
DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.
Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, Liu D, Stephens R, Baseler MW, Lane HC, Lempicki RA. Sherman BT, et al. Among authors: huang da w. BMC Bioinformatics. 2007 Nov 2;8:426. doi: 10.1186/1471-2105-8-426. BMC Bioinformatics. 2007. PMID: 17980028 Free PMC article.
Extracting biological meaning from large gene lists with DAVID.
Huang da W, Sherman BT, Zheng X, Yang J, Imamichi T, Stephens R, Lempicki RA. Huang da W, et al. Curr Protoc Bioinformatics. 2009 Sep;Chapter 13:Unit 13.11. doi: 10.1002/0471250953.bi1311s27. Curr Protoc Bioinformatics. 2009. PMID: 19728287
Interleukin-27 induces interferon-inducible genes: analysis of gene expression profiles using Affymetrix microarray and DAVID.
Imamichi T, Yang J, Huang da W, Sherman B, Lempicki RA. Imamichi T, et al. Among authors: huang da w. Methods Mol Biol. 2012;820:25-53. doi: 10.1007/978-1-61779-439-1_3. Methods Mol Biol. 2012. PMID: 22131024
DAVID-WS: a stateful web service to facilitate gene/protein list analysis.
Jiao X, Sherman BT, Huang da W, Stephens R, Baseler MW, Lane HC, Lempicki RA. Jiao X, et al. Among authors: huang da w. Bioinformatics. 2012 Jul 1;28(13):1805-6. doi: 10.1093/bioinformatics/bts251. Epub 2012 Apr 27. Bioinformatics. 2012. PMID: 22543366 Free PMC article.
Distinguishing highly similar gene isoforms with a clustering-based bioinformatics analysis of PacBio single-molecule long reads.
Liang M, Raley C, Zheng X, Kutty G, Gogineni E, Sherman BT, Sun Q, Chen X, Skelly T, Jones K, Stephens R, Zhou B, Lau W, Johnson C, Imamichi T, Jiang M, Dewar R, Lempicki RA, Tran B, Kovacs JA, Huang DW. Liang M, et al. Among authors: huang dw. BioData Min. 2016 Apr 5;9:13. doi: 10.1186/s13040-016-0090-8. eCollection 2016. BioData Min. 2016. PMID: 27051465 Free PMC article.
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