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SCOP: a structural classification of proteins database for the investigation of sequences and structures.
Murzin AG, Brenner SE, Hubbard T, Chothia C. Murzin AG, et al. Among authors: hubbard t. J Mol Biol. 1995 Apr 7;247(4):536-40. doi: 10.1006/jmbi.1995.0159. J Mol Biol. 1995. PMID: 7723011
Using neural networks for prediction of the subcellular location of proteins.
Reinhardt A, Hubbard T. Reinhardt A, et al. Among authors: hubbard t. Nucleic Acids Res. 1998 May 1;26(9):2230-6. doi: 10.1093/nar/26.9.2230. Nucleic Acids Res. 1998. PMID: 9547285 Free PMC article.
SPEM: a parser for EMBL style flat file database entries.
Pocock MR, Hubbard T, Birney E. Pocock MR, et al. Among authors: hubbard t. Bioinformatics. 1998;14(9):823-4. doi: 10.1093/bioinformatics/14.9.823. Bioinformatics. 1998. PMID: 9918956 Review.
Large-scale discovery of promoter motifs in Drosophila melanogaster.
Down TA, Bergman CM, Su J, Hubbard TJ. Down TA, et al. PLoS Comput Biol. 2007 Jan 19;3(1):e7. doi: 10.1371/journal.pcbi.0030007. Epub 2006 Dec 5. PLoS Comput Biol. 2007. PMID: 17238282 Free PMC article.
SCOP database in 2004: refinements integrate structure and sequence family data.
Andreeva A, Howorth D, Brenner SE, Hubbard TJ, Chothia C, Murzin AG. Andreeva A, et al. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D226-9. doi: 10.1093/nar/gkh039. Nucleic Acids Res. 2004. PMID: 14681400 Free PMC article.
SISYPHUS--structural alignments for proteins with non-trivial relationships.
Andreeva A, Prlić A, Hubbard TJ, Murzin AG. Andreeva A, et al. Nucleic Acids Res. 2007 Jan;35(Database issue):D253-9. doi: 10.1093/nar/gkl746. Epub 2006 Oct 26. Nucleic Acids Res. 2007. PMID: 17068077 Free PMC article.
Data growth and its impact on the SCOP database: new developments.
Andreeva A, Howorth D, Chandonia JM, Brenner SE, Hubbard TJ, Chothia C, Murzin AG. Andreeva A, et al. Nucleic Acids Res. 2008 Jan;36(Database issue):D419-25. doi: 10.1093/nar/gkm993. Epub 2007 Nov 13. Nucleic Acids Res. 2008. PMID: 18000004 Free PMC article.
Adding some SPICE to DAS.
Prlić A, Down TA, Hubbard TJ. Prlić A, et al. Bioinformatics. 2005 Sep 1;21 Suppl 2(Suppl 2):ii40-1. doi: 10.1093/bioinformatics/bti1106. Bioinformatics. 2005. PMID: 16204122 Free PMC article.
SCOP database in 2002: refinements accommodate structural genomics.
Lo Conte L, Brenner SE, Hubbard TJ, Chothia C, Murzin AG. Lo Conte L, et al. Nucleic Acids Res. 2002 Jan 1;30(1):264-7. doi: 10.1093/nar/30.1.264. Nucleic Acids Res. 2002. PMID: 11752311 Free PMC article.
MaxBench: evaluation of sequence and structure comparison methods.
Leplae R, Hubbard TJ. Leplae R, et al. Bioinformatics. 2002 Mar;18(3):494-5. doi: 10.1093/bioinformatics/18.3.494. Bioinformatics. 2002. PMID: 11934754
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