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HTSeq--a Python framework to work with high-throughput sequencing data.
Anders S, Pyl PT, Huber W. Anders S, et al. Bioinformatics. 2015 Jan 15;31(2):166-9. doi: 10.1093/bioinformatics/btu638. Epub 2014 Sep 25. Bioinformatics. 2015. PMID: 25260700 Free PMC article.
AVAILABILITY AND IMPLEMENTATION: HTSeq is released as an open-source software under the GNU General Public Licence and available from http://www-huber.embl.de/HTSeq or from the Python Package Index at https://pypi.python.org/pypi/HTSeq....
AVAILABILITY AND IMPLEMENTATION: HTSeq is released as an open-source software under the GNU General Public Licence and available from http:/ …
Identification and classification of differentially expressed genes in renal cell carcinoma by expression profiling on a global human 31,500-element cDNA array.
Boer JM, Huber WK, Sültmann H, Wilmer F, von Heydebreck A, Haas S, Korn B, Gunawan B, Vente A, Füzesi L, Vingron M, Poustka A. Boer JM, et al. Genome Res. 2001 Nov;11(11):1861-70. doi: 10.1101/gr.184501. Genome Res. 2001. PMID: 11691851 Free PMC article.
arrayMagic: two-colour cDNA microarray quality control and preprocessing.
Buness A, Huber W, Steiner K, Sültmann H, Poustka A. Buness A, et al. Bioinformatics. 2005 Feb 15;21(4):554-6. doi: 10.1093/bioinformatics/bti052. Epub 2004 Sep 28. Bioinformatics. 2005. PMID: 15454413
From ORFeome to biology: a functional genomics pipeline.
Wiemann S, Arlt D, Huber W, Wellenreuther R, Schleeger S, Mehrle A, Bechtel S, Sauermann M, Korf U, Pepperkok R, Sültmann H, Poustka A. Wiemann S, et al. Genome Res. 2004 Oct;14(10B):2136-44. doi: 10.1101/gr.2576704. Genome Res. 2004. PMID: 15489336 Free PMC article.
The LIFEdb database in 2006.
Mehrle A, Rosenfelder H, Schupp I, del Val C, Arlt D, Hahne F, Bechtel S, Simpson J, Hofmann O, Hide W, Glatting KH, Huber W, Pepperkok R, Poustka A, Wiemann S. Mehrle A, et al. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D415-8. doi: 10.1093/nar/gkj139. Nucleic Acids Res. 2006. PMID: 16381901 Free PMC article.
Transcript mapping with high-density oligonucleotide tiling arrays.
Huber W, Toedling J, Steinmetz LM. Huber W, et al. Bioinformatics. 2006 Aug 15;22(16):1963-70. doi: 10.1093/bioinformatics/btl289. Epub 2006 Jun 20. Bioinformatics. 2006. PMID: 16787969
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