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867 results
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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Love MI, Huber W, Anders S. Love MI, et al. Genome Biol. 2014;15(12):550. doi: 10.1186/s13059-014-0550-8. Genome Biol. 2014. PMID: 25516281 Free PMC article.
Bioconductor: open software development for computational biology and bioinformatics.
Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J, Hornik K, Hothorn T, Huber W, Iacus S, Irizarry R, Leisch F, Li C, Maechler M, Rossini AJ, Sawitzki G, Smith C, Smyth G, Tierney L, Yang JY, Zhang J. Gentleman RC, et al. Genome Biol. 2004;5(10):R80. doi: 10.1186/gb-2004-5-10-r80. Epub 2004 Sep 15. Genome Biol. 2004. PMID: 15461798 Free PMC article.
Analysis of cell-based RNAi screens.
Boutros M, BrĂ¡s LP, Huber W. Boutros M, et al. Genome Biol. 2006;7(7):R66. doi: 10.1186/gb-2006-7-7-R66. Genome Biol. 2006. PMID: 16869968 Free PMC article.
Statistical methods and software for the analysis of highthroughput reverse genetic assays using flow cytometry readouts.
Hahne F, Arlt D, Sauermann M, Majety M, Poustka A, Wiemann S, Huber W. Hahne F, et al. Genome Biol. 2006;7(8):R77. doi: 10.1186/gb-2006-7-8-R77. Epub 2006 Aug 17. Genome Biol. 2006. PMID: 16916453 Free PMC article.
Making the most of high-throughput protein-interaction data.
Gentleman R, Huber W. Gentleman R, et al. Genome Biol. 2007;8(10):112. doi: 10.1186/gb-2007-8-10-112. Genome Biol. 2007. PMID: 18001486 Free PMC article. Review.
Importing ArrayExpress datasets into R/Bioconductor.
Kauffmann A, Rayner TF, Parkinson H, Kapushesky M, Lukk M, Brazma A, Huber W. Kauffmann A, et al. Bioinformatics. 2009 Aug 15;25(16):2092-4. doi: 10.1093/bioinformatics/btp354. Epub 2009 Jun 8. Bioinformatics. 2009. PMID: 19505942 Free PMC article.
Differential expression analysis for sequence count data.
Anders S, Huber W. Anders S, et al. Genome Biol. 2010;11(10):R106. doi: 10.1186/gb-2010-11-10-r106. Epub 2010 Oct 27. Genome Biol. 2010. PMID: 20979621 Free PMC article.
SpeCond: a method to detect condition-specific gene expression.
Cavalli FM, Bourgon R, Vaquerizas JM, Luscombe NM. Cavalli FM, et al. Genome Biol. 2011 Oct 18;12(10):R101. doi: 10.1186/gb-2011-12-10-r101. Genome Biol. 2011. PMID: 22008066 Free PMC article.
Detecting differential usage of exons from RNA-seq data.
Anders S, Reyes A, Huber W. Anders S, et al. Genome Res. 2012 Oct;22(10):2008-17. doi: 10.1101/gr.133744.111. Epub 2012 Jun 21. Genome Res. 2012. PMID: 22722343 Free PMC article.
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