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GLOOME: gain loss mapping engine.
Cohen O, Ashkenazy H, Belinky F, Huchon D, Pupko T. Cohen O, et al. Among authors: huchon d. Bioinformatics. 2010 Nov 15;26(22):2914-5. doi: 10.1093/bioinformatics/btq549. Epub 2010 Sep 27. Bioinformatics. 2010. PMID: 20876605
RRTree: relative-rate tests between groups of sequences on a phylogenetic tree.
Robinson-Rechavi M, Huchon D. Robinson-Rechavi M, et al. Among authors: huchon d. Bioinformatics. 2000 Mar;16(3):296-7. doi: 10.1093/bioinformatics/16.3.296. Bioinformatics. 2000. PMID: 10869026
Large-scale parsimony analysis of metazoan indels in protein-coding genes.
Belinky F, Cohen O, Huchon D. Belinky F, et al. Among authors: huchon d. Mol Biol Evol. 2010 Feb;27(2):441-51. doi: 10.1093/molbev/msp263. Epub 2009 Oct 28. Mol Biol Evol. 2010. PMID: 19864469
Rodent phylogeny revised: analysis of six nuclear genes from all major rodent clades.
Blanga-Kanfi S, Miranda H, Penn O, Pupko T, DeBry RW, Huchon D. Blanga-Kanfi S, et al. Among authors: huchon d. BMC Evol Biol. 2009 Apr 2;9:71. doi: 10.1186/1471-2148-9-71. BMC Evol Biol. 2009. PMID: 19341461 Free PMC article.
Molecular diversity of benthic ctenophores (Coeloplanidae).
Alamaru A, Hoeksema BW, van der Meij SET, Huchon D. Alamaru A, et al. Among authors: huchon d. Sci Rep. 2017 Jul 25;7(1):6365. doi: 10.1038/s41598-017-06505-4. Sci Rep. 2017. PMID: 28743954 Free PMC article.
Extensive mitochondrial gene rearrangements in Ctenophora: insights from benthic Platyctenida.
Arafat H, Alamaru A, Gissi C, Huchon D. Arafat H, et al. Among authors: huchon d. BMC Evol Biol. 2018 Apr 27;18(1):65. doi: 10.1186/s12862-018-1186-1. BMC Evol Biol. 2018. PMID: 29703131 Free PMC article.
A genome wide survey reveals multiple nematocyst-specific genes in Myxozoa.
Shpirer E, Diamant A, Cartwright P, Huchon D. Shpirer E, et al. Among authors: huchon d. BMC Evol Biol. 2018 Sep 12;18(1):138. doi: 10.1186/s12862-018-1253-7. BMC Evol Biol. 2018. PMID: 30208843 Free PMC article.
Diversity of sponge mitochondrial introns revealed by cox 1 sequences of Tetillidae.
Szitenberg A, Rot C, Ilan M, Huchon D. Szitenberg A, et al. Among authors: huchon d. BMC Evol Biol. 2010 Sep 20;10:288. doi: 10.1186/1471-2148-10-288. BMC Evol Biol. 2010. PMID: 20849667 Free PMC article.
Tunicate mitogenomics and phylogenetics: peculiarities of the Herdmania momus mitochondrial genome and support for the new chordate phylogeny.
Singh TR, Tsagkogeorga G, Delsuc F, Blanquart S, Shenkar N, Loya Y, Douzery EJ, Huchon D. Singh TR, et al. Among authors: huchon d. BMC Genomics. 2009 Nov 17;10:534. doi: 10.1186/1471-2164-10-534. BMC Genomics. 2009. PMID: 19922605 Free PMC article.
The complete mitochondrial genome of the demosponge Negombata magnifica (Poecilosclerida).
Belinky F, Rot C, Ilan M, Huchon D. Belinky F, et al. Among authors: huchon d. Mol Phylogenet Evol. 2008 Jun;47(3):1238-43. doi: 10.1016/j.ympev.2007.12.004. Epub 2007 Dec 15. Mol Phylogenet Evol. 2008. PMID: 18203626 No abstract available.
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