Hughes TR - Search Results

1

Similarity regression predicts evolution of transcription factor sequence specificity.

Lambert SA, Yang AWH, Sasse A, Cowley G, Albu M, Caddick MX, Morris QD, Weirauch MT, Hughes TR. Lambert SA, et al. Among authors: hughes tr. Nat Genet. 2019 Jun;51(6):981-989. doi: 10.1038/s41588-019-0411-1. Epub 2019 May 27. Nat Genet. 2019. PMID: 31133749

2

Exploration of essential gene functions via titratable promoter alleles.

Mnaimneh S, Davierwala AP, Haynes J, Moffat J, Peng WT, Zhang W, Yang X, Pootoolal J, Chua G, Lopez A, Trochesset M, Morse D, Krogan NJ, Hiley SL, Li Z, Morris Q, Grigull J, Mitsakakis N, Roberts CJ, Greenblatt JF, Boone C, Kaiser CA, Andrews BJ, Hughes TR. Mnaimneh S, et al. Among authors: hughes tr. Cell. 2004 Jul 9;118(1):31-44. doi: 10.1016/j.cell.2004.06.013. Cell. 2004. PMID: 15242642 Free article.

3

Probing microRNAs with microarrays: tissue specificity and functional inference.

Babak T, Zhang W, Morris Q, Blencowe BJ, Hughes TR. Babak T, et al. Among authors: hughes tr. RNA. 2004 Nov;10(11):1813-9. doi: 10.1261/rna.7119904. RNA. 2004. PMID: 15496526 Free PMC article.

4

Transcriptional networks: reverse-engineering gene regulation on a global scale.

Chua G, Robinson MD, Morris Q, Hughes TR. Chua G, et al. Among authors: hughes tr. Curr Opin Microbiol. 2004 Dec;7(6):638-46. doi: 10.1016/j.mib.2004.10.009. Curr Opin Microbiol. 2004. PMID: 15556037 Review.

5

The functional landscape of mouse gene expression.

Zhang W, Morris QD, Chang R, Shai O, Bakowski MA, Mitsakakis N, Mohammad N, Robinson MD, Zirngibl R, Somogyi E, Laurin N, Eftekharpour E, Sat E, Grigull J, Pan Q, Peng WT, Krogan N, Greenblatt J, Fehlings M, van der Kooy D, Aubin J, Bruneau BG, Rossant J, Blencowe BJ, Frey BJ, Hughes TR. Zhang W, et al. Among authors: hughes tr. J Biol. 2004;3(5):21. doi: 10.1186/jbiol16. Epub 2004 Dec 6. J Biol. 2004. PMID: 15588312 Free PMC article.

6

Revealing global regulatory features of mammalian alternative splicing using a quantitative microarray platform.

Pan Q, Shai O, Misquitta C, Zhang W, Saltzman AL, Mohammad N, Babak T, Siu H, Hughes TR, Morris QD, Frey BJ, Blencowe BJ. Pan Q, et al. Among authors: hughes tr. Mol Cell. 2004 Dec 22;16(6):929-41. doi: 10.1016/j.molcel.2004.12.004. Mol Cell. 2004. PMID: 15610736 Free article.

7

Detection and discovery of RNA modifications using microarrays.

Hiley SL, Jackman J, Babak T, Trochesset M, Morris QD, Phizicky E, Hughes TR. Hiley SL, et al. Among authors: hughes tr. Nucleic Acids Res. 2005 Jan 7;33(1):e2. doi: 10.1093/nar/gni002. Nucleic Acids Res. 2005. PMID: 15640439 Free PMC article.

8

Alternative splicing of conserved exons is frequently species-specific in human and mouse.

Pan Q, Bakowski MA, Morris Q, Zhang W, Frey BJ, Hughes TR, Blencowe BJ. Pan Q, et al. Among authors: hughes tr. Trends Genet. 2005 Feb;21(2):73-7. doi: 10.1016/j.tig.2004.12.004. Trends Genet. 2005. PMID: 15661351

9

Genrate: a generative model that finds and scores new genes and exons in genomic microarray data.

Frey BJ, Morris QD, Zhang W, Mohammad N, Hughes TR. Frey BJ, et al. Among authors: hughes tr. Pac Symp Biocomput. 2005:495-506. Pac Symp Biocomput. 2005. PMID: 15759654 Free article.

10

GenXHC: a probabilistic generative model for cross-hybridization compensation in high-density genome-wide microarray data.

Huang JC, Morris QD, Hughes TR, Frey BJ. Huang JC, et al. Among authors: hughes tr. Bioinformatics. 2005 Jun;21 Suppl 1:i222-31. doi: 10.1093/bioinformatics/bti1045. Bioinformatics. 2005. PMID: 15961461

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