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Toward a curated CellML model repository.
Nickerson D, Stevens C, Halstead M, Hunter P, Nielsen P. Nickerson D, et al. Conf Proc IEEE Eng Med Biol Soc. 2006;2006:4237-40. doi: 10.1109/IEMBS.2006.260202. Conf Proc IEEE Eng Med Biol Soc. 2006. PMID: 17947072
Modular modelling with Physiome standards.
Cooling MT, Nickerson DP, Nielsen PM, Hunter PJ. Cooling MT, et al. Among authors: hunter pj. J Physiol. 2016 Dec 1;594(23):6817-6831. doi: 10.1113/JP272633. Epub 2016 Aug 29. J Physiol. 2016. PMID: 27353233 Free PMC article.
CellML and associated tools and techniques.
Garny A, Nickerson DP, Cooper J, Weber dos Santos R, Miller AK, McKeever S, Nielsen PM, Hunter PJ. Garny A, et al. Among authors: hunter pj. Philos Trans A Math Phys Eng Sci. 2008 Sep 13;366(1878):3017-43. doi: 10.1098/rsta.2008.0094. Philos Trans A Math Phys Eng Sci. 2008. PMID: 18579471 Review.
CellML metadata standards, associated tools and repositories.
Beard DA, Britten R, Cooling MT, Garny A, Halstead MD, Hunter PJ, Lawson J, Lloyd CM, Marsh J, Miller A, Nickerson DP, Nielsen PM, Nomura T, Subramanium S, Wimalaratne SM, Yu T. Beard DA, et al. Among authors: hunter pj. Philos Trans A Math Phys Eng Sci. 2009 May 28;367(1895):1845-67. doi: 10.1098/rsta.2008.0310. Philos Trans A Math Phys Eng Sci. 2009. PMID: 19380315 Free PMC article.
The Physiome Model Repository 2.
Yu T, Lloyd CM, Nickerson DP, Cooling MT, Miller AK, Garny A, Terkildsen JR, Lawson J, Britten RD, Hunter PJ, Nielsen PM. Yu T, et al. Among authors: hunter pj. Bioinformatics. 2011 Mar 1;27(5):743-4. doi: 10.1093/bioinformatics/btq723. Epub 2011 Jan 6. Bioinformatics. 2011. PMID: 21216774
Revision history aware repositories of computational models of biological systems.
Miller AK, Yu T, Britten R, Cooling MT, Lawson J, Cowan D, Garny A, Halstead MD, Hunter PJ, Nickerson DP, Nunns G, Wimalaratne SM, Nielsen PM. Miller AK, et al. Among authors: hunter pj. BMC Bioinformatics. 2011 Jan 14;12:22. doi: 10.1186/1471-2105-12-22. BMC Bioinformatics. 2011. PMID: 21235804 Free PMC article.
OpenCMISS: a multi-physics & multi-scale computational infrastructure for the VPH/Physiome project.
Bradley C, Bowery A, Britten R, Budelmann V, Camara O, Christie R, Cookson A, Frangi AF, Gamage TB, Heidlauf T, Krittian S, Ladd D, Little C, Mithraratne K, Nash M, Nickerson D, Nielsen P, Nordbø O, Omholt S, Pashaei A, Paterson D, Rajagopal V, Reeve A, Röhrle O, Safaei S, Sebastián R, Steghöfer M, Wu T, Yu T, Zhang H, Hunter P. Bradley C, et al. Prog Biophys Mol Biol. 2011 Oct;107(1):32-47. doi: 10.1016/j.pbiomolbio.2011.06.015. Epub 2011 Jul 7. Prog Biophys Mol Biol. 2011. PMID: 21762717
190 results