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The plant cell cycle.
Huntley RP, Murray JA. Huntley RP, et al. Curr Opin Plant Biol. 1999 Dec;2(6):440-6. doi: 10.1016/s1369-5266(99)00027-8. Curr Opin Plant Biol. 1999. PMID: 10607661 Review.
Dissecting regulatory pathways of G1/S control in Arabidopsis: common and distinct targets of CYCD3;1, E2Fa and E2Fc.
de Jager SM, Scofield S, Huntley RP, Robinson AS, den Boer BG, Murray JA. de Jager SM, et al. Among authors: huntley rp. Plant Mol Biol. 2009 Nov;71(4-5):345-65. doi: 10.1007/s11103-009-9527-5. Epub 2009 Aug 7. Plant Mol Biol. 2009. PMID: 19662336
D-type cyclins activate division in the root apex to promote seed germination in Arabidopsis.
Masubelele NH, Dewitte W, Menges M, Maughan S, Collins C, Huntley R, Nieuwland J, Scofield S, Murray JA. Masubelele NH, et al. Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15694-9. doi: 10.1073/pnas.0507581102. Epub 2005 Oct 14. Proc Natl Acad Sci U S A. 2005. PMID: 16227434 Free PMC article.
The maize retinoblastoma protein homologue ZmRb-1 is regulated during leaf development and displays conserved interactions with G1/S regulators and plant cyclin D (CycD) proteins.
Huntley R, Healy S, Freeman D, Lavender P, de Jager S, Greenwood J, Makker J, Walker E, Jackman M, Xie Q, Bannister AJ, Kouzarides T, Gutiérrez C, Doonan JH, Murray JA. Huntley R, et al. Plant Mol Biol. 1998 May;37(1):155-69. doi: 10.1023/a:1005902226256. Plant Mol Biol. 1998. PMID: 9620273
Cytokinin activation of Arabidopsis cell division through a D-type cyclin.
Riou-Khamlichi C, Huntley R, Jacqmard A, Murray JA. Riou-Khamlichi C, et al. Science. 1999 Mar 5;283(5407):1541-4. doi: 10.1126/science.283.5407.1541. Science. 1999. PMID: 10066178
An expanded evaluation of protein function prediction methods shows an improvement in accuracy.
Jiang Y, Oron TR, Clark WT, Bankapur AR, D'Andrea D, Lepore R, Funk CS, Kahanda I, Verspoor KM, Ben-Hur A, Koo da CE, Penfold-Brown D, Shasha D, Youngs N, Bonneau R, Lin A, Sahraeian SM, Martelli PL, Profiti G, Casadio R, Cao R, Zhong Z, Cheng J, Altenhoff A, Skunca N, Dessimoz C, Dogan T, Hakala K, Kaewphan S, Mehryary F, Salakoski T, Ginter F, Fang H, Smithers B, Oates M, Gough J, Törönen P, Koskinen P, Holm L, Chen CT, Hsu WL, Bryson K, Cozzetto D, Minneci F, Jones DT, Chapman S, Bkc D, Khan IK, Kihara D, Ofer D, Rappoport N, Stern A, Cibrian-Uhalte E, Denny P, Foulger RE, Hieta R, Legge D, Lovering RC, Magrane M, Melidoni AN, Mutowo-Meullenet P, Pichler K, Shypitsyna A, Li B, Zakeri P, ElShal S, Tranchevent LC, Das S, Dawson NL, Lee D, Lees JG, Sillitoe I, Bhat P, Nepusz T, Romero AE, Sasidharan R, Yang H, Paccanaro A, Gillis J, Sedeño-Cortés AE, Pavlidis P, Feng S, Cejuela JM, Goldberg T, Hamp T, Richter L, Salamov A, Gabaldon T, Marcet-Houben M, Supek F, Gong Q, Ning W, Zhou Y, Tian W, Falda M, Fontana P, Lavezzo E, Toppo S, Ferrari C, Giollo M, Piovesan D, Tosatto SC, Del Pozo A, Fernández JM, Maietta P, Valencia A, Tress ML, Benso A, Di Carlo S, Politano G, Savino A, Rehman HU, Re M, Mesiti M, Valentini G, Bargsten JW, van Dijk AD, Gemovic B, Glisic S, Perovic V, Veljkovic V, Veljkovic N, Almeida-E-Silva DC, Vencio RZ, Sharan M, Vogel J, Kansakar L, Zhang S, Vucetic S, Wang Z, Sternberg MJ, Wass MN, Huntley RP, Martin MJ, O'Donovan C, Robinson PN, Moreau Y, Tramontano A, Babbitt PC, Brenner SE, Linial M, Orengo CA, Rost B, Greene CS, Mooney SD, Friedberg I, Radivojac P. Jiang Y, et al. Among authors: huntley rp. Genome Biol. 2016 Sep 7;17(1):184. doi: 10.1186/s13059-016-1037-6. Genome Biol. 2016. PMID: 27604469 Free PMC article.
Cytokinins and gibberellins in sap exudate of the oil palm.
Huntley RP, Jones LH, Hanke DE. Huntley RP, et al. Phytochemistry. 2002 May;60(2):117-27. doi: 10.1016/s0031-9422(02)00099-7. Phytochemistry. 2002. PMID: 12009314
Guidelines for the functional annotation of microRNAs using the Gene Ontology.
Huntley RP, Sitnikov D, Orlic-Milacic M, Balakrishnan R, D'Eustachio P, Gillespie ME, Howe D, Kalea AZ, Maegdefessel L, Osumi-Sutherland D, Petri V, Smith JR, Van Auken K, Wood V, Zampetaki A, Mayr M, Lovering RC. Huntley RP, et al. RNA. 2016 May;22(5):667-76. doi: 10.1261/rna.055301.115. Epub 2016 Feb 25. RNA. 2016. PMID: 26917558 Free PMC article.
MINT and IntAct contribute to the Second BioCreative challenge: serving the text-mining community with high quality molecular interaction data.
Chatr-aryamontri A, Kerrien S, Khadake J, Orchard S, Ceol A, Licata L, Castagnoli L, Costa S, Derow C, Huntley R, Aranda B, Leroy C, Thorneycroft D, Apweiler R, Cesareni G, Hermjakob H. Chatr-aryamontri A, et al. Genome Biol. 2008;9 Suppl 2(Suppl 2):S5. doi: 10.1186/gb-2008-9-s2-s5. Epub 2008 Sep 1. Genome Biol. 2008. PMID: 18834496 Free PMC article.
The GOA database: gene Ontology annotation updates for 2015.
Huntley RP, Sawford T, Mutowo-Meullenet P, Shypitsyna A, Bonilla C, Martin MJ, O'Donovan C. Huntley RP, et al. Nucleic Acids Res. 2015 Jan;43(Database issue):D1057-63. doi: 10.1093/nar/gku1113. Epub 2014 Nov 6. Nucleic Acids Res. 2015. PMID: 25378336 Free PMC article.
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