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A tissue-specific atlas of mouse protein phosphorylation and expression.
Huttlin EL, Jedrychowski MP, Elias JE, Goswami T, Rad R, Beausoleil SA, Villén J, Haas W, Sowa ME, Gygi SP. Huttlin EL, et al. Cell. 2010 Dec 23;143(7):1174-89. doi: 10.1016/j.cell.2010.12.001. Cell. 2010. PMID: 21183079 Free PMC article.
Correct interpretation of comprehensive phosphorylation dynamics requires normalization by protein expression changes.
Wu R, Dephoure N, Haas W, Huttlin EL, Zhai B, Sowa ME, Gygi SP. Wu R, et al. Mol Cell Proteomics. 2011 Aug;10(8):M111.009654. doi: 10.1074/mcp.M111.009654. Epub 2011 May 7. Mol Cell Proteomics. 2011. PMID: 21551504 Free PMC article.
A large-scale method to measure absolute protein phosphorylation stoichiometries.
Wu R, Haas W, Dephoure N, Huttlin EL, Zhai B, Sowa ME, Gygi SP. Wu R, et al. Nat Methods. 2011 Jul 3;8(8):677-83. doi: 10.1038/nmeth.1636. Nat Methods. 2011. PMID: 21725298 Free PMC article.
Systematic and quantitative assessment of the ubiquitin-modified proteome.
Kim W, Bennett EJ, Huttlin EL, Guo A, Li J, Possemato A, Sowa ME, Rad R, Rush J, Comb MJ, Harper JW, Gygi SP. Kim W, et al. Mol Cell. 2011 Oct 21;44(2):325-40. doi: 10.1016/j.molcel.2011.08.025. Epub 2011 Sep 8. Mol Cell. 2011. PMID: 21906983 Free PMC article.
Evaluation of HCD- and CID-type fragmentation within their respective detection platforms for murine phosphoproteomics.
Jedrychowski MP, Huttlin EL, Haas W, Sowa ME, Rad R, Gygi SP. Jedrychowski MP, et al. Mol Cell Proteomics. 2011 Dec;10(12):M111.009910. doi: 10.1074/mcp.M111.009910. Epub 2011 Sep 13. Mol Cell Proteomics. 2011. PMID: 21917720 Free PMC article.
Landscape of the PARKIN-dependent ubiquitylome in response to mitochondrial depolarization.
Sarraf SA, Raman M, Guarani-Pereira V, Sowa ME, Huttlin EL, Gygi SP, Harper JW. Sarraf SA, et al. Nature. 2013 Apr 18;496(7445):372-6. doi: 10.1038/nature12043. Epub 2013 Mar 17. Nature. 2013. PMID: 23503661 Free PMC article.
Mass spectrometry based method to increase throughput for kinome analyses using ATP probes.
McAllister FE, Niepel M, Haas W, Huttlin E, Sorger PK, Gygi SP. McAllister FE, et al. Anal Chem. 2013 May 7;85(9):4666-74. doi: 10.1021/ac303478g. Epub 2013 Apr 22. Anal Chem. 2013. PMID: 23607489 Free PMC article.
Global analysis of protein expression and phosphorylation of three stages of Plasmodium falciparum intraerythrocytic development.
Pease BN, Huttlin EL, Jedrychowski MP, Talevich E, Harmon J, Dillman T, Kannan N, Doerig C, Chakrabarti R, Gygi SP, Chakrabarti D. Pease BN, et al. J Proteome Res. 2013 Sep 6;12(9):4028-45. doi: 10.1021/pr400394g. Epub 2013 Aug 26. J Proteome Res. 2013. PMID: 23914800 Free PMC article.
TIMMDC1/C3orf1 functions as a membrane-embedded mitochondrial complex I assembly factor through association with the MCIA complex.
Guarani V, Paulo J, Zhai B, Huttlin EL, Gygi SP, Harper JW. Guarani V, et al. Mol Cell Biol. 2014 Mar;34(5):847-61. doi: 10.1128/MCB.01551-13. Epub 2013 Dec 16. Mol Cell Biol. 2014. PMID: 24344204 Free PMC article.
Quantitative temporal viromics: an approach to investigate host-pathogen interaction.
Weekes MP, Tomasec P, Huttlin EL, Fielding CA, Nusinow D, Stanton RJ, Wang ECY, Aicheler R, Murrell I, Wilkinson GWG, Lehner PJ, Gygi SP. Weekes MP, et al. Cell. 2014 Jun 5;157(6):1460-1472. doi: 10.1016/j.cell.2014.04.028. Cell. 2014. PMID: 24906157 Free PMC article.
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