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Population genomics of a symbiont in the early stages of a pest invasion.

Brown AM, Huynh LY, Bolender CM, Nelson KG, McCutcheon JP. Brown AM, et al. Among authors: huynh ly. Mol Ecol. 2014 Mar;23(6):1516-30. doi: 10.1111/mec.12366. Epub 2013 Jul 11. Mol Ecol. 2014. PMID: 23841878

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Habitat barriers limit gene flow and illuminate historical events in a wide-ranging carnivore, the American puma.

McRae BH, Beier P, Dewald LE, Huynh LY, Keim P. McRae BH, et al. Among authors: huynh ly. Mol Ecol. 2005 Jun;14(7):1965-77. doi: 10.1111/j.1365-294x.2005.02571.x. Mol Ecol. 2005. PMID: 15910319

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Bacillus anthracis in China and its relationship to worldwide lineages.

Simonson TS, Okinaka RT, Wang B, Easterday WR, Huynh L, U'Ren JM, Dukerich M, Zanecki SR, Kenefic LJ, Beaudry J, Schupp JM, Pearson T, Wagner DM, Hoffmaster A, Ravel J, Keim P. Simonson TS, et al. BMC Microbiol. 2009 Apr 15;9:71. doi: 10.1186/1471-2180-9-71. BMC Microbiol. 2009. PMID: 19368722 Free PMC article.

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Anthrax molecular epidemiology and forensics: using the appropriate marker for different evolutionary scales.

Keim P, Van Ert MN, Pearson T, Vogler AJ, Huynh LY, Wagner DM. Keim P, et al. Among authors: huynh ly. Infect Genet Evol. 2004 Sep;4(3):205-13. doi: 10.1016/j.meegid.2004.02.005. Infect Genet Evol. 2004. PMID: 15450200 Review.

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Global genetic population structure of Bacillus anthracis.

Van Ert MN, Easterday WR, Huynh LY, Okinaka RT, Hugh-Jones ME, Ravel J, Zanecki SR, Pearson T, Simonson TS, U'Ren JM, Kachur SM, Leadem-Dougherty RR, Rhoton SD, Zinser G, Farlow J, Coker PR, Smith KL, Wang B, Kenefic LJ, Fraser-Liggett CM, Wagner DM, Keim P. Van Ert MN, et al. Among authors: huynh ly. PLoS One. 2007 May 23;2(5):e461. doi: 10.1371/journal.pone.0000461. PLoS One. 2007. PMID: 17520020 Free PMC article.

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Mass spectrometry provides accurate characterization of two genetic marker types in Bacillus anthracis.

Van Ert MN, Hofstadler SA, Jiang Y, Busch JD, Wagner DM, Drader JJ, Ecker DJ, Hannis JC, Huynh LY, Schupp JM, Simonson TS, Keim P. Van Ert MN, et al. Among authors: huynh ly. Biotechniques. 2004 Oct;37(4):642-4, 646, 648 passim. doi: 10.2144/04374RR01. Biotechniques. 2004. PMID: 15517976

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Phylogenetic discovery bias in Bacillus anthracis using single-nucleotide polymorphisms from whole-genome sequencing.

Pearson T, Busch JD, Ravel J, Read TD, Rhoton SD, U'Ren JM, Simonson TS, Kachur SM, Leadem RR, Cardon ML, Van Ert MN, Huynh LY, Fraser CM, Keim P. Pearson T, et al. Among authors: huynh ly. Proc Natl Acad Sci U S A. 2004 Sep 14;101(37):13536-41. doi: 10.1073/pnas.0403844101. Epub 2004 Sep 3. Proc Natl Acad Sci U S A. 2004. PMID: 15347815 Free PMC article.

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High resolution genotyping of Bacillus anthracis outbreak strains using four highly mutable single nucleotide repeat markers.

Kenefic LJ, Beaudry J, Trim C, Daly R, Parmar R, Zanecki S, Huynh L, Van Ert MN, Wagner DM, Graham T, Keim P. Kenefic LJ, et al. Lett Appl Microbiol. 2008 May;46(5):600-3. doi: 10.1111/j.1472-765X.2008.02353.x. Epub 2008 Mar 18. Lett Appl Microbiol. 2008. PMID: 18363651

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Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping.

U'Ren JM, Schupp JM, Pearson T, Hornstra H, Friedman CL, Smith KL, Daugherty RR, Rhoton SD, Leadem B, Georgia S, Cardon M, Huynh LY, DeShazer D, Harvey SP, Robison R, Gal D, Mayo MJ, Wagner D, Currie BJ, Keim P. U'Ren JM, et al. Among authors: huynh ly. BMC Microbiol. 2007 Mar 30;7:23. doi: 10.1186/1471-2180-7-23. BMC Microbiol. 2007. PMID: 17397553 Free PMC article.

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Strain-specific single-nucleotide polymorphism assays for the Bacillus anthracis Ames strain.

Van Ert MN, Easterday WR, Simonson TS, U'Ren JM, Pearson T, Kenefic LJ, Busch JD, Huynh LY, Dukerich M, Trim CB, Beaudry J, Welty-Bernard A, Read T, Fraser CM, Ravel J, Keim P. Van Ert MN, et al. Among authors: huynh ly. J Clin Microbiol. 2007 Jan;45(1):47-53. doi: 10.1128/JCM.01233-06. Epub 2006 Nov 8. J Clin Microbiol. 2007. PMID: 17093023 Free PMC article.

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